Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.2e-105 386.7 225 100.0
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 7.5e-100 367.5 225 95.6
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.4e-98 363.2 225 94.2
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 3.2e-98 362.1 225 94.2
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.6e-97 358.2 225 93.3
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.3e-95 352.1 230 90.4
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 7.3e-95 350.9 230 90.0
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.2e-94 350.1 225 92.0
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 2.1e-94 349.4 229 90.0
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.1e-94 349.4 230 90.0
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 2.8e-94 349.0 229 90.4
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 4.7e-94 348.2 229 90.8
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 8.0e-94 347.4 229 90.4
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.0e-93 347.1 229 90.0
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.0e-93 347.1 229 90.4
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.0e-93 347.1 229 90.0
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.0e-93 347.1 229 90.0
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.0e-93 347.1 230 89.6
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.0e-93 347.1 230 89.6
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.0e-93 347.1 230 89.6
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.3e-93 345.9 229 90.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.3e-93 345.9 228 89.9
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.3e-93 345.9 227 90.3
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 1.5e-92 343.2 229 88.2
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 2.0e-92 342.8 225 91.6
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.6e-92 342.4 226 90.3
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 4.4e-92 341.7 230 88.3
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 4.4e-92 341.7 230 88.3
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 5.8e-92 341.3 228 88.6
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 1.7e-91 339.7 233 87.6
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.9e-91 339.0 230 87.8
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 3.7e-91 338.6 229 87.3
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 6.4e-91 337.8 232 88.4
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 89.1
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 87.8
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 9.2e-90 334.0 227 87.7
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 2.0e-89 332.8 227 87.2
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 4.6e-89 331.6 225 87.6
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.3e-88 330.1 225 86.7
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.3e-88 330.1 228 86.0
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 2.3e-88 329.3 225 87.6
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 2.3e-88 329.3 225 87.6
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 3.9e-88 328.6 225 87.6
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 5.0e-88 328.2 225 87.6
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 5.0e-88 328.2 225 86.2
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 6.6e-88 327.8 225 86.7
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.5e-87 326.6 225 86.7
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.5e-87 326.6 225 86.2
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.5e-87 326.6 225 86.7
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 1.9e-87 326.2 225 86.7
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 2.5e-87 325.9 225 86.7
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 2.5e-87 325.9 225 86.2
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 3.3e-87 325.5 225 87.6
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.3e-87 325.5 225 86.7
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.3e-87 325.5 225 86.7
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 4.3e-87 325.1 225 86.7
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.6e-87 324.7 211 90.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 9.5e-87 323.9 225 85.3
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 9.5e-87 323.9 236 84.3
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.5e-87 323.9 225 86.2
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 9.5e-87 323.9 225 86.7
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.6e-86 323.2 225 86.2
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 87.0
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.6e-86 323.2 225 85.8
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.1e-86 322.8 225 86.2
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 2.1e-86 322.8 224 85.7
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 2.8e-86 322.4 225 86.2
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.8e-86 322.4 224 86.2
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.6e-86 322.0 225 85.8
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.7e-86 321.6 225 85.8
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 4.7e-86 321.6 225 85.8
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 4.7e-86 321.6 192 96.9
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 6.2e-86 321.2 225 86.7
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.2e-86 321.2 222 86.5
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 8.1e-86 320.9 225 85.3
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 8.1e-86 320.9 269 76.2
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.1e-85 320.5 227 84.6
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.1e-85 320.5 227 84.6
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 1.1e-85 320.5 225 84.9
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 1.4e-85 320.1 227 85.0
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.4e-85 320.1 225 85.3
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.8e-85 319.7 195 94.4
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.8e-85 319.7 225 85.3
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 2.3e-85 319.3 224 86.2
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 2.3e-85 319.3 227 84.1
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.3e-85 319.3 226 86.3
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 2.3e-85 319.3 225 84.9
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 3.1e-85 318.9 228 83.8
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 3.1e-85 318.9 225 84.4
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.1e-85 318.9 225 84.9
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 3.1e-85 318.9 224 85.3
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 4.0e-85 318.5 225 84.9
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 5.2e-85 318.2 227 84.1
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 5.2e-85 318.2 227 84.1
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 6.8e-85 317.8 226 84.1
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 6.8e-85 317.8 225 84.4
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 6.8e-85 317.8 225 84.4
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 8.9e-85 317.4 227 83.7
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 8.9e-85 317.4 227 83.7
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 8.9e-85 317.4 227 83.7
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.2e-84 317.0 225 84.9
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 1.5e-84 316.6 225 83.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 2.6e-84 315.8 227 84.1
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.4e-84 315.5 281 64.8
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 4.4e-84 315.1 225 84.0
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 4.4e-84 315.1 225 84.0
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 4.4e-84 315.1 225 84.0
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 4.4e-84 315.1 225 84.0
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 4.4e-84 315.1 225 84.0
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 4.4e-84 315.1 227 83.3
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.8e-84 314.7 225 84.4
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 9.8e-84 313.9 225 83.1
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.3e-83 313.5 227 82.8
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.2e-83 312.8 225 83.6
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 2.9e-83 312.4 227 83.3
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 4.9e-83 311.6 228 82.5
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.9e-82 309.7 227 82.8
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 2.4e-82 309.3 227 82.8
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.2e-81 307.0 230 81.3
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 3.0e-80 302.4 209 86.6
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.1e-79 300.4 185 94.6
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.5e-79 300.1 227 81.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.9e-79 299.7 206 86.9
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 7.3e-79 297.7 212 84.9
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 2.8e-78 295.8 225 79.6
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.4e-77 293.5 179 95.5
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.8e-77 293.1 184 92.9
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 3.1e-77 292.4 193 91.7
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 4.0e-77 292.0 189 91.0
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 3.4e-76 288.9 225 78.2
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 8.4e-75 284.3 231 78.4
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 7.1e-74 281.2 197 87.3
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 6.0e-73 278.1 185 87.6
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 7.8e-73 277.7 168 95.8
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.1e-71 273.9 205 83.4
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 8.1e-70 267.7 187 84.5
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 8.1e-70 267.7 186 85.5
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.8e-69 266.5 225 72.4
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 2.4e-69 266.2 193 85.0
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 8.4e-67 257.7 169 89.3
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 8.4e-67 257.7 222 73.9
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 1.7e-64 250.0 164 89.6
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.6e-63 245.0 222 64.4
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.3e-62 243.8 148 98.0
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.1e-62 243.0 180 80.6
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 9.9e-60 234.2 148 90.5
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 4.9e-59 231.9 225 67.6
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 7.9e-57 224.6 178 77.5
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.3e-56 223.8 202 68.3
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.7e-56 221.1 178 69.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.5e-55 219.5 136 97.1
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 8.1e-54 214.5 166 75.9
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 7.6e-52 208.0 155 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 3.8e-51 205.7 153 83.0
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.4e-51 204.5 240 55.4
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 7.1e-50 201.4 132 93.9
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.8e-48 196.8 162 74.7
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.1e-45 187.6 139 71.9
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 9.0e-45 184.5 113 81.4
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 3.8e-43 179.1 151 64.9
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.9e-34 150.2 123 65.9
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 5.5e-34 148.7 225 46.7
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 1.3e-32 144.1 127 61.4
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.4e-24 117.5 205 41.5
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 8.5e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.4e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.0e-16 89.7 78 62.8
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 8.8e-08 61.6 109 44.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 7.5e-07 58.5 60 51.7


User provided reference genes

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