Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 0.0e+00 1446.8 723 100.0
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.6e-236 822.0 742 60.5
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.2e-234 817.0 742 60.0
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 8.5e-230 800.8 723 60.0
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 8.2e-156 555.1 788 44.5
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 3.0e-65 254.2 462 36.1
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.6e-63 248.4 467 35.1
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 6.2e-63 246.5 467 35.8
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 6.9e-62 243.0 786 29.4
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 3.5e-58 230.7 468 37.6
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 3.5e-58 230.7 482 34.0
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 6.0e-58 229.9 797 29.1
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.3e-57 228.8 801 28.5
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 6.6e-57 226.5 481 33.3
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.1e-56 225.7 801 28.3
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.9e-56 224.9 794 29.6
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.9e-56 224.9 591 30.8
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.5e-56 224.6 544 32.4
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 9.6e-56 222.6 467 35.3
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.1e-54 219.2 809 27.7
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.4e-54 218.0 762 28.9
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 3.1e-54 217.6 808 29.2
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 6.9e-54 216.5 542 32.1
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 9.0e-54 216.1 467 35.8
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 5.8e-53 213.4 471 34.4
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 7.6e-53 213.0 822 28.0
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 9.9e-53 212.6 572 30.6
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 4.2e-51 207.2 330 40.0
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 7.1e-51 206.5 763 27.7
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 4.6e-50 203.8 797 27.7
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.0e-49 202.6 605 30.1
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.9e-49 200.7 468 33.8
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.6e-47 195.3 471 34.6
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.1e-46 192.6 389 35.7
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.8e-46 191.8 348 39.1
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 6.9e-46 189.9 322 39.1
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 5.8e-45 186.8 561 31.6
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.7e-44 185.3 325 38.2
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 4.9e-44 183.7 559 31.3
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.9e-43 181.8 581 29.6
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 2.4e-43 181.4 545 29.5
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 3.2e-43 181.0 743 27.6
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.6e-42 178.7 475 30.7
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.7e-42 177.9 738 27.0
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 3.9e-41 174.1 463 32.4
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.5e-40 172.2 284 37.7
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.9e-40 171.8 761 26.9
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.5e-40 171.4 622 26.7
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 3.3e-40 171.0 466 32.8
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 4.3e-40 170.6 740 26.8
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 5.6e-40 170.2 481 32.2
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 6.2e-39 166.8 801 27.8
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 2.4e-38 164.9 670 28.4
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.3e-38 163.7 368 34.5
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 6.9e-38 163.3 328 35.4
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.2e-37 162.5 472 29.2
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.0e-37 161.8 300 36.0
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 2.6e-37 161.4 467 31.3
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.4e-37 161.0 448 31.9
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.8e-37 160.2 339 34.2
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 5.8e-37 160.2 469 30.1
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.0e-36 159.5 344 33.4
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.8e-36 157.5 815 26.3
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.1e-35 156.0 789 26.6
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.4e-35 155.6 248 38.7
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 7.1e-35 153.3 799 26.2
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 9.3e-35 152.9 566 30.7
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.6e-34 152.1 320 35.0
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 1.1e-32 146.0 244 42.2
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 1.9e-32 145.2 463 31.5
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.9e-32 145.2 472 29.7
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.5e-32 144.8 339 35.1
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 6.3e-31 140.2 318 34.3
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 8.2e-31 139.8 425 32.7
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 6.9e-30 136.7 319 34.5
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.0e-29 135.2 251 37.5
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.4e-27 129.0 477 29.8
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 3.2e-27 127.9 600 26.2
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 7.2e-27 126.7 477 29.6
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 9.4e-27 126.3 321 34.6
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.4e-25 122.5 319 32.0
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 1.4e-25 122.5 334 34.1
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 3.0e-25 121.3 472 27.3
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 3.0e-25 121.3 734 24.1
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 3.9e-25 120.9 535 27.7
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.8e-23 114.0 355 30.1
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.1e-22 112.8 473 26.8
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.8e-22 112.1 227 36.6
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 2.4e-22 111.7 311 32.2
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 3.1e-22 111.3 472 25.2
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 9.1e-22 109.8 309 32.4
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 2.6e-21 108.2 364 31.0
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.3e-20 105.9 362 32.9
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 8.5e-20 103.2 481 26.8
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.9e-19 102.1 341 30.5
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 4.2e-19 100.9 351 29.6
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 9.4e-19 99.8 225 34.7
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.2e-18 99.4 365 30.4
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 1.6e-18 99.0 363 29.2
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 2.1e-18 98.6 317 29.3
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 4.7e-18 97.4 346 30.1
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 3.9e-17 94.4 358 28.8
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.1e-16 92.8 360 28.6
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.6e-16 91.7 342 28.1
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 5.7e-16 90.5 297 29.0
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 7.4e-16 90.1 104 44.2
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 4.8e-15 87.4 339 27.7
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 4.8e-15 87.4 339 27.7
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 4.8e-15 87.4 339 27.7
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.4e-14 85.9 285 27.4
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.8e-14 85.5 177 33.3
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 3.1e-14 84.7 574 24.4
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.6e-13 81.6 462 24.9
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 2.6e-13 81.6 338 28.1
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 5.9e-13 80.5 340 28.2
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 5.9e-13 80.5 340 28.2
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 2.2e-12 78.6 177 32.2
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 2.9e-12 78.2 234 32.1
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 5.0e-12 77.4 340 28.8
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 5.0e-12 77.4 340 28.8
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 8.5e-12 76.6 402 26.6
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.1e-11 76.3 340 29.1
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 9.4e-11 73.2 150 35.3
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 3.0e-09 68.2 233 28.3
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 5.2e-09 67.4 189 30.7
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 2.6e-08 65.1 175 28.6
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 1.3e-07 62.8 53 58.5
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 2.4e-06 58.5 312 28.5
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 5.3e-06 57.4 234 28.2
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 7.0e-06 57.0 187 34.2


User provided reference genes

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