Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 8.8e-96 353.6 176 100.0
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.3e-51 206.1 121 81.8
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.2e-49 200.3 105 88.6
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 8.0e-49 197.6 103 88.3
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.8e-48 196.4 103 87.4
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.9e-48 194.1 103 86.4
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.9e-48 194.1 103 86.4
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.3e-46 187.6 103 82.5
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 6.0e-44 181.4 103 79.6
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 2.3e-43 179.5 103 79.6
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 3.0e-43 179.1 103 79.6
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.1e-42 177.2 103 79.6
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.1e-42 177.2 100 81.0
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.1e-42 177.2 103 75.7
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 1.1e-42 177.2 103 77.7
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.5e-42 176.8 103 78.6
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 4.3e-42 175.3 107 73.8
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.6e-42 174.9 100 79.0
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 7.3e-42 174.5 100 80.0
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 9.5e-42 174.1 101 78.2
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.2e-41 173.7 111 73.0
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.2e-41 173.7 100 79.0
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.2e-41 173.7 100 79.0
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.2e-41 173.7 100 79.0
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.6e-41 173.3 102 76.5
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.6e-41 173.3 100 78.0
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.6e-41 173.3 100 78.0
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.6e-41 173.3 100 80.0
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 2.1e-41 172.9 100 79.0
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.1e-41 172.9 100 78.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.8e-41 172.6 101 77.2
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 3.6e-41 172.2 101 75.2
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 3.6e-41 172.2 100 78.0
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 3.6e-41 172.2 98 78.6
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 3.6e-41 172.2 100 78.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 4.7e-41 171.8 101 75.2
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 6.2e-41 171.4 100 77.0
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 6.2e-41 171.4 103 76.7
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.1e-40 170.6 101 74.3
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-40 170.6 101 74.3
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.1e-40 170.6 101 74.3
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.1e-40 170.6 101 74.3
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.1e-40 170.6 101 74.3
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.1e-40 170.6 103 75.7
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.4e-40 170.2 100 75.0
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.4e-40 170.2 100 76.0
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.8e-40 169.9 101 73.3
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 2.3e-40 169.5 101 76.2
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 3.1e-40 169.1 101 73.3
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 3.1e-40 169.1 100 76.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 3.1e-40 169.1 100 76.0
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 3.1e-40 169.1 98 76.5
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 4.0e-40 168.7 100 73.0
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 4.0e-40 168.7 101 73.3
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 4.0e-40 168.7 101 73.3
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.0e-40 168.7 100 76.0
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 4.0e-40 168.7 100 75.0
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 5.2e-40 168.3 101 73.3
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.2e-40 168.3 101 74.3
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.2e-40 168.3 101 74.3
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 6.8e-40 167.9 99 76.8
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 8.9e-40 167.5 101 74.3
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 8.9e-40 167.5 101 74.3
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.9e-40 167.5 101 74.3
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-39 167.2 99 73.7
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.2e-39 167.2 100 73.0
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 1.5e-39 166.8 102 74.5
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.5e-39 166.8 104 69.2
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.5e-39 166.8 100 76.0
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.0e-39 166.4 100 76.0
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 2.6e-39 166.0 101 71.3
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 2.6e-39 166.0 101 71.3
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.6e-39 166.0 101 71.3
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 2.6e-39 166.0 101 71.3
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 2.6e-39 166.0 99 73.7
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.6e-39 166.0 101 71.3
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.6e-39 166.0 101 73.3
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 2.6e-39 166.0 103 72.8
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 2.6e-39 166.0 100 75.0
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.6e-39 166.0 104 75.0
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 2.6e-39 166.0 103 73.8
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.6e-39 166.0 101 74.3
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 3.4e-39 165.6 101 74.3
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 3.4e-39 165.6 101 75.2
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 3.4e-39 165.6 103 73.8
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 4.4e-39 165.2 100 74.0
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.4e-39 165.2 101 73.3
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 4.4e-39 165.2 100 75.0
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 4.4e-39 165.2 101 74.3
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 4.4e-39 165.2 101 73.3
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 5.8e-39 164.9 100 74.0
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 5.8e-39 164.9 100 74.0
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 5.8e-39 164.9 122 64.8
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 5.8e-39 164.9 99 76.8
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 7.5e-39 164.5 100 74.0
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 7.5e-39 164.5 101 73.3
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 7.5e-39 164.5 101 72.3
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 9.9e-39 164.1 104 73.1
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.3e-38 163.7 100 73.0
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.3e-38 163.7 100 73.0
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.2e-38 162.9 98 73.5
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.9e-38 162.5 98 76.5
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 3.7e-38 162.2 103 70.9
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 3.7e-38 162.2 102 71.6
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 4.9e-38 161.8 99 72.7
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 6.4e-38 161.4 99 72.7
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.1e-37 160.6 115 63.5
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.1e-37 160.6 101 72.3
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.4e-37 159.5 99 71.7
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 2.4e-37 159.5 97 74.2
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 3.2e-37 159.1 97 73.2
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.2e-36 157.1 100 73.0
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 3.5e-36 155.6 125 63.2
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.0e-35 154.1 100 68.0
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 8.6e-35 151.0 136 54.4
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 8.6e-35 151.0 100 67.0
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.5e-34 150.2 98 71.4
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 3.6e-33 145.6 101 69.3
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.5e-31 140.2 88 70.5
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 6.4e-30 134.8 168 45.8
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.4e-29 133.7 102 59.8
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 9.2e-29 131.0 99 59.6
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.1e-28 129.8 82 69.5
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.9e-27 125.6 101 61.4
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 7.3e-26 121.3 100 53.0
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 2.4e-24 116.3 103 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 9.9e-23 110.9 93 53.8
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 9.9e-23 110.9 101 53.5
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.7e-22 110.2 96 54.2
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.7e-22 110.2 96 54.2
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 8.4e-22 107.8 102 53.9
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.2e-21 105.5 81 63.0
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.7e-19 100.1 148 41.2
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-19 98.2 100 48.0
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.5e-18 97.1 110 46.4
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.6e-17 93.6 57 77.2
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.0e-15 86.7 46 78.3
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 4.5e-15 85.5 52 76.9
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.5e-15 85.5 46 76.1
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 5.8e-15 85.1 80 52.5
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 7.6e-15 84.7 84 50.0
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 2.2e-14 83.2 46 73.9
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.4e-13 78.6 46 69.6
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 2.1e-12 76.6 55 58.2
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 3.0e-11 72.8 53 67.9
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 8.7e-11 71.2 47 59.6
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 5.3e-08 62.0 97 37.1
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 2.2e-06 56.6 82 45.1


User provided reference genes

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