Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.9e-193 679.1 372 100.0
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.7e-163 578.9 376 86.4
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 8.2e-160 567.4 373 86.3
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.5e-142 510.0 373 75.6
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 3.3e-137 492.3 371 75.5
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 9.7e-137 490.7 371 73.6
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.8e-135 486.5 380 73.2
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 3.5e-134 482.3 373 72.4
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 7.7e-134 481.1 375 75.5
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 7.7e-134 481.1 383 72.6
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.7e-133 479.9 375 73.6
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.7e-133 479.9 375 73.3
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 6.5e-133 478.0 385 70.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 6.5e-133 478.0 378 74.3
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.5e-132 476.1 372 69.9
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.5e-132 476.1 376 74.5
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 3.2e-132 475.7 375 72.5
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.1e-131 473.0 371 73.0
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.1e-131 473.0 375 73.6
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 6.1e-131 471.5 369 71.8
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 8.0e-131 471.1 374 71.7
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-130 469.9 372 72.8
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.8e-130 469.9 374 72.2
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 4.0e-130 468.8 378 72.5
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 5.2e-130 468.4 382 69.6
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 8.8e-130 467.6 352 74.7
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.2e-129 467.2 369 72.1
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.2e-129 467.2 374 71.7
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 2.0e-129 466.5 369 71.5
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.6e-129 466.1 362 74.0
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.6e-129 466.1 374 72.7
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.7e-129 464.2 342 76.3
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.3e-128 463.8 366 71.6
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 2.2e-128 463.0 368 70.4
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.2e-128 463.0 380 70.8
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.8e-128 461.8 377 71.6
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.2e-128 461.1 372 71.5
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.8e-127 459.9 388 70.1
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.4e-127 459.5 340 75.9
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.6e-126 456.8 370 68.4
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 2.0e-126 456.4 368 71.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 4.5e-126 455.3 343 74.9
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 5.9e-126 454.9 362 71.8
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 7.7e-126 454.5 371 70.6
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.3e-125 453.8 383 67.6
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.3e-125 453.8 373 68.4
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.2e-125 453.0 375 69.9
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 5.0e-125 451.8 375 69.6
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 8.5e-125 451.1 375 69.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 8.5e-125 451.1 370 68.6
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.1e-124 450.7 326 75.5
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.1e-124 450.7 337 74.8
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.5e-124 450.3 381 69.6
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.5e-124 450.3 374 68.4
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.9e-124 449.9 375 69.6
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.9e-124 449.9 377 67.6
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.9e-124 449.9 376 69.9
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 2.5e-124 449.5 380 69.5
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 4.2e-124 448.7 370 70.5
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 5.5e-124 448.4 376 69.7
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 9.4e-124 447.6 370 70.3
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 9.4e-124 447.6 370 70.3
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 9.4e-124 447.6 349 73.4
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.2e-123 447.2 359 71.0
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.2e-123 447.2 326 73.9
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 1.6e-123 446.8 371 69.8
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-123 446.8 370 70.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-123 446.8 375 69.3
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-123 446.8 370 70.3
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.6e-123 446.8 368 68.2
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-123 446.4 371 70.4
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.7e-123 446.0 376 68.6
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.6e-123 445.7 370 69.7
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.7e-123 445.3 376 68.4
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 6.1e-123 444.9 371 69.8
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 8.0e-123 444.5 366 71.0
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.0e-122 444.1 330 75.5
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 3.0e-122 442.6 370 69.5
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 8.8e-122 441.0 369 69.9
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.2e-121 440.7 369 69.9
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.2e-121 440.7 339 74.3
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 1.5e-121 440.3 380 66.3
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.5e-121 440.3 371 69.3
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.0e-121 439.9 368 69.8
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.0e-121 439.9 368 68.5
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.6e-121 439.5 365 69.3
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 3.4e-121 439.1 368 68.2
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 5.7e-121 438.3 366 69.9
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 5.7e-121 438.3 366 69.9
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.3e-120 437.2 355 71.0
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 2.8e-120 436.0 341 73.3
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 4.8e-120 435.3 360 69.2
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 6.3e-120 434.9 330 74.2
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.1e-119 434.1 319 75.5
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.4e-119 433.7 372 66.1
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 1.8e-119 433.3 365 69.0
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 3.1e-119 432.6 372 66.1
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 5.4e-119 431.8 368 67.1
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 7.0e-119 431.4 372 66.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 7.0e-119 431.4 372 68.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 7.0e-119 431.4 375 68.3
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 7.0e-119 431.4 368 66.8
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 7.0e-119 431.4 372 68.0
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 2.7e-118 429.5 344 69.2
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.7e-117 426.8 375 66.7
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 3.8e-117 425.6 372 68.5
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.5e-117 424.9 329 71.7
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 7.2e-116 421.4 375 65.9
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.2e-115 420.6 375 65.6
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.6e-115 420.2 353 69.7
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 4.7e-115 418.7 358 68.4
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.8e-114 416.8 354 62.1
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.8e-114 416.8 349 68.2
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 2.6e-113 412.9 370 64.6
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 2.1e-107 393.3 328 68.3
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.3e-104 384.0 324 66.4
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 8.6e-101 371.3 325 65.5
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.1e-100 370.9 373 61.1
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 7.3e-100 368.2 316 69.9
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 3.6e-99 365.9 331 62.8
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.3e-96 357.5 378 61.6
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 7.0e-95 351.7 374 56.4
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-93 347.8 295 69.5
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.9e-92 343.6 326 62.0
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 3.4e-89 332.8 247 76.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.4e-87 327.4 342 57.0
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.1e-87 325.9 297 58.9
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.1e-86 323.6 243 77.0
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 6.0e-86 322.0 206 78.2
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.9e-84 317.0 291 67.0
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.2e-81 307.8 317 57.1
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 7.6e-81 305.1 378 52.1
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.8e-75 286.6 322 54.3
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 4.9e-72 275.8 346 54.0
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.6e-67 259.6 230 62.2
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 3.4e-57 226.5 208 60.6
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.6e-51 207.6 208 55.3
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 8.7e-45 185.3 130 73.8
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.6e-43 181.0 165 58.8
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 6.1e-38 162.5 151 60.9
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 8.2e-35 152.1 164 55.5
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 6.1e-30 136.0 100 67.0
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.4e-29 134.8 89 73.0
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.5e-25 121.3 128 53.1
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.5e-25 121.3 112 57.1
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-25 119.8 78 78.2
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 2.1e-22 110.9 91 64.8
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 2.1e-22 110.9 94 61.7
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 4.7e-22 109.8 124 51.6
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.8e-19 100.5 102 53.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 5.3e-18 96.3 283 31.1
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.0e-18 95.9 103 54.4
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-17 94.4 65 70.8
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 7.7e-17 92.4 326 31.3
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 1.6e-14 84.7 158 40.5
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 3.6e-14 83.6 82 57.3
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 5.3e-10 69.7 67 85.1
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.7e-09 67.4 49 63.3
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.5e-09 66.6 46 76.1
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 5.9e-09 66.2 62 58.1
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 1.0e-08 65.5 59 55.9
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-08 64.3 54 63.0
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.9e-08 63.9 46 71.7
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-07 61.6 54 61.1
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.5e-07 60.8 63 55.6
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.2e-07 60.1 47 59.6
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 5.5e-07 59.7 240 29.2
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.2e-07 59.3 46 69.6
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.2e-07 59.3 72 48.6
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.2e-07 59.3 72 48.6
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 3.6e-06 57.0 69 46.4
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 8.0e-06 55.8 73 43.8


User provided reference genes

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