Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 1.2e-166 589.7 298 100.0
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 3.0e-144 515.4 344 77.6
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 8.0e-142 507.3 325 77.8
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 2.6e-140 502.3 327 77.1
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 2.9e-131 472.2 329 72.6
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 9.2e-130 467.2 329 70.2
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.2e-129 466.8 329 71.7
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 3.5e-129 465.3 329 71.4
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 6.0e-129 464.5 329 71.4
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 6.0e-129 464.5 329 71.4
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 7.8e-129 464.2 329 69.3
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 1.0e-128 463.8 327 70.6
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 1.3e-128 463.4 327 69.7
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 1.3e-128 463.4 329 69.9
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.7e-128 463.0 326 71.2
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 1.7e-128 463.0 329 71.4
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 1.7e-128 463.0 329 71.4
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 3.0e-128 462.2 329 69.9
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 3.9e-128 461.8 327 69.7
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 5.1e-128 461.5 326 70.9
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 5.1e-128 461.5 329 69.3
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 5.1e-128 461.5 329 71.1
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 5.1e-128 461.5 328 70.4
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 5.1e-128 461.5 329 69.0
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 5.1e-128 461.5 328 69.5
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 6.6e-128 461.1 326 70.6
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.1e-127 460.3 329 69.9
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.1e-127 460.3 329 69.6
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 1.1e-127 460.3 329 70.8
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.5e-127 459.9 328 70.1
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.5e-127 459.9 329 69.6
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 1.9e-127 459.5 329 70.8
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 7.3e-127 457.6 329 70.5
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 7.3e-127 457.6 329 70.2
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 9.5e-127 457.2 327 70.6
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 1.2e-126 456.8 328 68.9
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 1.6e-126 456.4 329 69.3
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 2.1e-126 456.1 328 70.4
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 3.6e-126 455.3 329 68.4
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 3.6e-126 455.3 329 68.4
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.1e-125 453.8 329 68.7
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.1e-125 453.8 329 68.7
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 1.4e-125 453.4 329 67.8
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 1.8e-125 453.0 329 68.4
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.8e-125 453.0 329 69.6
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 2.3e-125 452.6 329 69.6
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 3.1e-125 452.2 329 68.7
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 5.2e-125 451.4 329 68.7
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 6.8e-125 451.1 329 67.8
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 6.8e-125 451.1 329 67.8
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 8.9e-125 450.7 329 68.1
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 8.9e-125 450.7 329 69.3
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 2.6e-124 449.1 329 68.1
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 3.4e-124 448.7 328 68.6
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 4.4e-124 448.4 329 67.8
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 4.4e-124 448.4 329 68.4
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 4.4e-124 448.4 329 69.0
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 5.8e-124 448.0 329 67.2
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 5.8e-124 448.0 329 68.1
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 7.6e-124 447.6 328 68.3
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 7.6e-124 447.6 327 67.6
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 1.3e-123 446.8 329 67.8
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 1.7e-123 446.4 328 68.6
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 4.9e-123 444.9 329 65.7
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.9e-122 443.0 329 66.9
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 2.4e-122 442.6 329 65.7
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 2.4e-122 442.6 329 65.7
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 3.2e-122 442.2 328 68.3
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.2e-121 440.3 329 66.0
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 1.6e-121 439.9 329 67.2
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 2.7e-121 439.1 329 66.6
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 3.5e-121 438.7 360 61.7
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 1.3e-120 436.8 327 67.3
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.7e-120 436.4 326 65.3
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 2.3e-120 436.0 330 66.7
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 3.9e-120 435.3 329 66.3
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 3.9e-120 435.3 360 61.4
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 6.6e-120 434.5 330 66.1
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.1e-119 433.7 329 65.3
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.9e-119 433.0 329 66.3
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.9e-119 433.0 327 67.0
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 9.6e-119 430.6 324 67.6
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 1.6e-118 429.9 326 64.1
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 3.6e-118 428.7 402 57.5
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 6.2e-118 427.9 329 64.4
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 1.1e-117 427.2 313 66.1
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 5.2e-117 424.9 329 65.0
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 5.2e-117 424.9 329 64.1
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 6.8e-117 424.5 329 63.8
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 2.0e-116 422.9 329 65.0
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.2e-113 413.7 329 62.9
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 2.1e-113 412.9 328 62.5
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 2.7e-113 412.5 321 64.8
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 3.0e-112 409.1 317 63.7
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 2.4e-109 399.4 348 60.1
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 5.4e-106 388.3 344 63.7
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 3.9e-96 355.5 329 57.1
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 4.8e-94 348.6 329 55.9
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 1.4e-93 347.1 284 61.3
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 2.1e-89 333.2 270 61.5
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 5.1e-88 328.6 329 51.7
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 9.6e-87 324.3 284 59.5
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 2.2e-83 313.2 326 51.2
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.9e-82 310.1 329 49.8
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 7.2e-82 308.1 201 76.6
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 5.1e-80 302.0 334 49.4
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-79 297.7 298 51.7
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 8.2e-78 294.7 330 45.8
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-77 293.1 332 48.2
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 3.1e-77 292.7 225 66.2
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 4.1e-77 292.4 330 47.3
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 5.3e-77 292.0 294 50.7
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 6.9e-77 291.6 329 47.4
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-75 287.7 333 47.4
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-75 286.2 330 44.8
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 3.8e-75 285.8 330 47.6
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 8.5e-75 284.6 329 47.7
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 3.2e-74 282.7 198 69.2
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 7.2e-74 281.6 315 48.3
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.2e-73 280.8 223 63.7
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 3.9e-72 275.8 326 46.3
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 3.9e-72 275.8 330 46.4
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-71 274.2 329 46.2
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-71 274.2 329 45.3
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-71 273.9 329 45.9
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 5.7e-71 271.9 330 45.2
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 8.2e-70 268.1 330 44.5
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-64 250.4 330 41.2
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 7.4e-63 245.0 329 41.3
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.5e-55 220.7 144 72.9
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 4.1e-53 212.6 264 42.8
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.7e-51 207.2 190 58.4
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 3.8e-51 206.1 140 68.6
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 1.5e-50 204.1 173 63.6
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 3.6e-49 199.5 118 79.7
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 6.3e-46 188.7 129 74.4
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 8.3e-46 188.3 177 51.4
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-44 184.5 219 46.6
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 8.5e-43 178.3 190 46.8
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 7.2e-42 175.3 133 62.4
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 4.4e-39 166.0 105 74.3
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 4.1e-37 159.5 101 74.3
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 2.9e-35 153.3 158 53.2
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.2e-28 131.3 319 32.0
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 2.0e-23 114.0 78 67.9
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 5.8e-23 112.5 259 30.5
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 9.8e-23 111.7 366 28.1
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 6.4e-22 109.0 69 68.1
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 4.7e-17 92.8 337 27.3
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.3e-16 90.5 320 27.2
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.2e-15 88.2 69 62.3
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.0e-15 87.4 348 25.6
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.6e-15 87.0 59 71.2
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.2e-14 84.0 57 70.2
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.2e-12 78.2 45 80.0
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.7e-11 74.3 127 38.6
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.0e-11 73.6 307 28.7
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 5.1e-11 72.8 47 70.2
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 8.6e-11 72.0 51 64.7
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 1.2e-09 68.2 56 57.1
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 2.1e-09 67.4 46 69.6
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 2.8e-09 67.0 48 66.7
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 3.6e-09 66.6 94 42.6
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 1.8e-08 64.3 327 24.8
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 3.8e-06 56.6 81 44.4
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 3.8e-06 56.6 98 33.7


User provided reference genes

Program Settings