Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 5.8e-81 304.3 166 100.0
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 1.3e-69 266.5 158 92.4
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 8.3e-64 247.3 152 89.5
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 6.6e-61 237.7 150 86.7
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 1.4e-58 229.9 147 85.0
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 1.2e-57 226.9 154 80.5
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 9.9e-57 223.8 155 80.6
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 1.3e-56 223.4 145 84.8
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 1.3e-56 223.4 151 83.4
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 2.9e-56 222.2 151 82.8
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.9e-56 222.2 151 82.8
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 3.8e-56 221.9 152 80.3
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 6.4e-56 221.1 151 82.1
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 8.4e-56 220.7 151 81.5
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.1e-55 220.3 144 85.4
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.9e-55 219.5 151 81.5
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.9e-55 219.5 151 81.5
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 3.2e-55 218.8 153 79.1
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 3.2e-55 218.8 145 81.4
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 4.2e-55 218.4 150 78.7
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 7.1e-55 217.6 154 78.6
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 9.3e-55 217.2 151 81.5
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 1.6e-54 216.5 149 81.2
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 2.7e-54 215.7 150 77.3
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 3.5e-54 215.3 149 82.6
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 3.5e-54 215.3 145 81.4
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 4.6e-54 214.9 149 81.2
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 4.6e-54 214.9 154 77.9
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 6.0e-54 214.5 145 79.3
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 7.8e-54 214.2 148 81.1
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 7.8e-54 214.2 148 81.1
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 7.8e-54 214.2 145 78.6
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 7.8e-54 214.2 169 74.6
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 1.0e-53 213.8 150 79.3
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 1.7e-53 213.0 145 78.6
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.7e-53 213.0 149 78.5
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 1.7e-53 213.0 154 76.0
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 1.7e-53 213.0 151 79.5
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 2.3e-53 212.6 147 78.9
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 2.3e-53 212.6 152 77.0
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 2.3e-53 212.6 152 77.0
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 2.3e-53 212.6 146 80.1
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 3.9e-53 211.8 146 79.5
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 5.1e-53 211.5 146 79.5
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 6.6e-53 211.1 148 77.7
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 8.7e-53 210.7 140 82.9
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 8.7e-53 210.7 150 78.0
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 1.1e-52 210.3 149 79.2
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 1.1e-52 210.3 149 78.5
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 1.9e-52 209.5 148 75.0
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 1.9e-52 209.5 149 77.9
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 3.3e-52 208.8 153 72.5
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 3.3e-52 208.8 153 71.9
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 4.3e-52 208.4 153 71.9
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 7.3e-52 207.6 153 71.9
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 9.6e-52 207.2 153 72.5
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 9.6e-52 207.2 153 71.9
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 9.6e-52 207.2 153 72.5
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 9.6e-52 207.2 153 72.5
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 1.3e-51 206.8 155 76.8
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 2.1e-51 206.1 153 71.9
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 2.1e-51 206.1 153 71.2
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 2.1e-51 206.1 155 72.3
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 3.6e-51 205.3 153 71.9
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 3.6e-51 205.3 142 78.9
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 8.1e-51 204.1 147 75.5
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 8.1e-51 204.1 149 75.8
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 1.4e-50 203.4 133 84.2
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 1.8e-50 203.0 153 71.2
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 1.8e-50 203.0 150 76.0
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 4.0e-50 201.8 152 73.7
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 4.0e-50 201.8 149 73.8
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 1.5e-49 199.9 151 72.8
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 3.4e-49 198.7 150 72.0
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 3.4e-49 198.7 153 69.9
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 4.4e-49 198.4 142 76.8
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 5.8e-49 198.0 143 75.5
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 5.8e-49 198.0 143 75.5
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 7.6e-49 197.6 150 74.0
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 1.7e-48 196.4 142 75.4
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 1.7e-48 196.4 152 72.4
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 6.4e-48 194.5 150 75.3
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 2.1e-46 189.5 139 71.2
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 3.5e-46 188.7 145 70.3
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 6.0e-46 188.0 148 69.6
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 1.0e-45 187.2 143 69.9
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 8.7e-45 184.1 152 68.4
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 5.6e-44 181.4 145 71.7
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 2.1e-43 179.5 152 68.4
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 6.2e-43 177.9 149 71.1
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.4e-42 176.8 143 67.1
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 9.0e-42 174.1 155 66.5
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 1.5e-41 173.3 153 63.4
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 1.5e-41 173.3 149 69.1
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 2.4e-39 166.0 146 68.5
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 2.4e-39 166.0 225 50.2
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 3.0e-37 159.1 151 64.9
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 3.0e-37 159.1 114 78.9
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 6.7e-37 157.9 152 63.8
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 1.5e-36 156.8 113 78.8
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 1.5e-36 156.8 113 75.2
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.8e-35 152.5 140 61.4
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 4.8e-35 151.8 152 61.2
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 1.5e-33 146.7 143 51.7
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.5e-33 146.7 150 62.7
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 7.6e-33 144.4 113 69.0
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 2.9e-32 142.5 140 51.4
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.1e-31 140.6 152 59.2
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 2.5e-31 139.4 111 72.1
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 3.2e-31 139.0 108 72.2
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 1.2e-30 137.1 171 53.2
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 2.1e-30 136.3 150 56.0
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 6.0e-30 134.8 120 63.3
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 3.9e-29 132.1 106 67.9
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 1.9e-28 129.8 150 57.3
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 9.6e-28 127.5 91 76.9
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 1.1e-26 124.0 137 45.3
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 3.1e-26 122.5 148 56.8
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 4.5e-25 118.6 81 82.7
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 4.5e-25 118.6 150 54.0
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 4.5e-25 118.6 150 54.0
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 1.9e-20 103.2 126 54.0
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 5.9e-17 91.7 65 75.4
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 1.1e-12 77.4 143 37.1
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 2.2e-11 73.2 55 69.1
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 1.5e-09 67.0 157 30.6
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 5.9e-09 65.1 127 38.6
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.3e-08 63.9 46 67.4
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 1.7e-08 63.5 41 75.6


User provided reference genes

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