Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 4.6e-45 184.5 114 100.0
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 4.0e-17 91.7 119 59.7
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 1.7e-15 86.3 119 53.8
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 2.1e-13 79.3 120 57.5
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 3.0e-12 75.5 35 88.6
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 3.9e-12 75.1 35 88.6
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 5.1e-12 74.7 35 88.6
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 5.1e-12 74.7 35 85.7
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 1.1e-11 73.6 113 41.6
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 1.1e-11 73.6 114 46.5
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 1.5e-11 73.2 35 85.7
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.9e-11 72.8 33 87.9
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 2.5e-11 72.4 95 44.2
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 2.5e-11 72.4 95 44.2
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 3.3e-11 72.0 33 87.9
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 3.3e-11 72.0 34 85.3
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 4.3e-11 71.6 33 87.9
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 4.3e-11 71.6 32 93.8
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 4.3e-11 71.6 32 93.8
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 4.3e-11 71.6 33 90.9
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 5.6e-11 71.2 35 85.7
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 5.6e-11 71.2 32 93.8
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 7.4e-11 70.9 34 85.3
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 7.4e-11 70.9 34 82.4
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 7.4e-11 70.9 35 80.0
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 9.6e-11 70.5 35 80.0
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 9.6e-11 70.5 87 50.6
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 1.3e-10 70.1 33 84.8
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 1.3e-10 70.1 33 84.8
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 1.6e-10 69.7 33 84.8
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 1.6e-10 69.7 35 82.9
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 1.6e-10 69.7 35 82.9
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 1.6e-10 69.7 114 39.5
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 1.6e-10 69.7 34 79.4
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 1.6e-10 69.7 117 39.3
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 2.1e-10 69.3 32 84.4
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 2.8e-10 68.9 81 43.2
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 2.8e-10 68.9 98 40.8
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 2.8e-10 68.9 83 57.8
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 2.8e-10 68.9 35 82.9
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 2.8e-10 68.9 35 80.0
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 2.8e-10 68.9 112 36.6
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 3.6e-10 68.6 35 82.9
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 3.6e-10 68.6 32 87.5
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 3.6e-10 68.6 32 84.4
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 3.6e-10 68.6 35 77.1
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 3.6e-10 68.6 33 84.8
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 4.8e-10 68.2 32 84.4
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 4.8e-10 68.2 92 39.1
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 4.8e-10 68.2 32 87.5
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 4.8e-10 68.2 88 64.8
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 6.2e-10 67.8 35 80.0
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 6.2e-10 67.8 32 87.5
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 6.2e-10 67.8 32 87.5
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 6.2e-10 67.8 95 44.2
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 8.1e-10 67.4 32 81.2
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 8.1e-10 67.4 35 80.0
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 8.1e-10 67.4 35 80.0
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 8.1e-10 67.4 104 40.4
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 8.1e-10 67.4 32 87.5
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 8.1e-10 67.4 106 45.3
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 8.1e-10 67.4 32 87.5
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 1.1e-09 67.0 31 90.3
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 1.1e-09 67.0 31 90.3
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 1.1e-09 67.0 31 90.3
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 1.1e-09 67.0 31 90.3
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 1.1e-09 67.0 35 77.1
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.1e-09 67.0 114 56.1
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 1.1e-09 67.0 34 76.5
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 1.1e-09 67.0 31 90.3
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 1.1e-09 67.0 34 79.4
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 1.4e-09 66.6 33 84.8
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 1.4e-09 66.6 34 79.4
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 1.8e-09 66.2 32 84.4
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 1.8e-09 66.2 32 84.4
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 1.8e-09 66.2 35 80.0
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 2.4e-09 65.9 32 81.2
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 2.4e-09 65.9 30 90.0
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 2.4e-09 65.9 32 84.4
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 2.4e-09 65.9 31 83.9
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 2.4e-09 65.9 95 53.7
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 3.1e-09 65.5 30 86.7
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 4.0e-09 65.1 114 35.1
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 5.3e-09 64.7 114 55.3
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 9.0e-09 63.9 118 38.1
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 1.5e-08 63.2 121 37.2
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 2.6e-08 62.4 118 33.9
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 2.6e-08 62.4 118 37.3
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 2.6e-08 62.4 28 85.7
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 5.8e-08 61.2 121 38.8
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 7.6e-08 60.8 33 75.8
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 9.9e-08 60.5 33 75.8
FAN03G0879 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.7e-07 59.7 115 38.3
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 1.7e-07 59.7 111 44.1
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 2.2e-07 59.3 112 34.8
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 2.9e-07 58.9 26 92.3
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 2.9e-07 58.9 31 77.4
PRCOL_00002099 Prasinoderma coloniale HOM05D007326 ORTHO05D009048 6.4e-07 57.8 33 72.7
FvH4_7g31800 Fragaria vesca HOM05D000354 ORTHO05D000717 3.2e-06 55.5 63 47.6
arahy.Tifrunner.gnm1.ann1.SUR8QF Arachis hypogaea HOM05D007326 ORTHO05D009048 7.1e-06 54.3 91 48.4
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 9.3e-06 53.9 117 36.8


User provided reference genes

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