Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 3101.2 1577 100.0
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 2132.5 1693 67.2
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 2088.9 1638 67.8
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 2068.1 1613 66.7
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1701.0 1659 54.9
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1420.2 1631 50.6
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1404.4 1610 48.2
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1393.3 1611 48.4
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1382.1 1627 48.9
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1366.3 1630 47.6
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1360.1 1641 48.0
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1353.2 1694 46.9
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1350.1 1657 47.4
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1346.6 1608 48.6
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1346.3 1644 46.4
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1345.1 1636 46.8
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1343.2 1636 46.6
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1343.2 1615 47.4
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1338.9 1657 47.3
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1336.2 1598 48.2
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1333.5 1645 46.9
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1325.1 1610 47.6
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1324.7 1630 47.3
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1324.3 1718 45.9
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1320.8 1615 47.4
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1292.3 1286 53.9
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1271.5 1352 50.8
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1270.0 1603 46.4
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1264.6 1626 45.0
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1261.9 1615 44.8
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1256.5 1582 46.4
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1256.1 1619 45.1
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1251.5 1579 46.9
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1250.3 1611 44.8
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1249.2 1609 45.4
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1248.4 1579 46.1
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1246.5 1631 46.0
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1245.3 1595 46.6
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1245.0 1641 45.6
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1245.0 1579 46.2
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1242.3 1629 44.6
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1241.5 1629 45.5
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1237.6 1579 45.9
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1232.2 1652 44.2
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1230.7 1595 46.2
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1224.9 1259 52.0
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1224.2 1596 45.0
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1223.4 1640 43.8
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1215.7 1627 44.1
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1208.7 1576 44.7
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1206.4 1624 46.1
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1204.5 1637 43.5
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1204.1 1618 44.1
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1203.3 1556 43.9
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1199.5 1598 44.6
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1189.9 1596 44.7
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1189.1 1620 43.5
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1188.7 1626 43.0
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1188.3 1646 42.8
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1188.3 1613 43.0
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1186.4 1596 43.8
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1184.5 1604 42.9
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1184.1 1591 43.8
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1178.3 1571 44.4
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1177.2 1617 42.7
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1168.3 1664 42.4
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1164.4 1568 44.0
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1160.6 1426 46.7
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 1154.4 1505 44.9
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1153.3 1382 48.6
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1146.0 1799 40.2
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 1142.1 1361 47.0
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1094.7 1495 44.0
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 0.0e+00 1087.4 1497 44.2
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1085.5 1579 42.8
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 1085.1 1667 40.1
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1081.6 1587 42.1
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1080.5 1565 43.3
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1078.2 1630 42.0
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1076.2 1563 43.2
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1075.8 1562 42.2
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 1.2e-308 1063.9 1600 41.6
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 2.1e-305 1053.1 1579 40.2
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 4.6e-305 1052.0 1478 42.6
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 6.3e-302 1041.6 1573 40.0
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 1.1e-285 987.6 1491 41.3
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 7.0e-285 984.9 1340 43.8
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 5.9e-284 981.9 1327 43.9
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 7.7e-284 981.5 1356 43.4
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 3.2e-282 976.1 1363 43.4
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 9.1e-277 958.0 1559 38.2
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 4.5e-276 955.7 1090 47.0
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 7.2e-274 948.3 1003 50.5
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 5.4e-253 879.0 1578 36.6
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 3.7e-246 856.3 1629 35.7
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 5.2e-232 809.3 964 46.3
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 3.7e-185 653.7 1610 31.1
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.6e-183 647.5 994 40.3
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 3.6e-180 637.1 1539 31.4
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 6.3e-177 626.3 1701 30.6
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 5.5e-165 586.6 774 44.2
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.3e-161 575.5 802 41.9
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 1.9e-149 535.0 812 41.9
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 4.4e-146 523.9 905 36.5
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 4.9e-145 520.4 822 38.7
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 5.0e-142 510.4 1502 29.4
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 5.2e-139 500.4 571 47.8
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 9.2e-136 489.6 1250 28.3
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.7e-118 432.2 684 41.1
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 6.8e-115 420.2 718 39.0
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 2.7e-111 408.3 537 43.8
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 4.5e-98 364.4 382 53.1
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 8.4e-97 360.1 567 40.7
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.2e-96 357.8 507 41.4
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.4e-83 315.5 605 38.7
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 9.0e-83 313.5 302 57.9
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.3e-57 229.9 419 36.5
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 5.0e-57 228.0 475 34.5
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 6.1e-55 221.1 193 58.5
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 2.4e-51 209.1 909 24.9
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 9.4e-40 170.6 428 32.5
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.2e-39 170.2 122 66.4
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.3e-33 150.2 190 44.2
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 2.9e-33 149.1 133 54.1
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 1.5e-32 146.7 342 33.9
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 2.6e-29 136.0 291 35.4
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 2.6e-29 136.0 97 69.1
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 6.3e-28 131.3 135 51.9
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 8.3e-28 131.0 135 49.6
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 3.1e-27 129.0 297 34.0
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.1e-27 128.6 192 43.2
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.1e-27 128.6 192 42.7
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.8e-26 124.4 162 43.2
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.0e-25 124.0 168 44.0
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.1e-24 120.6 167 43.7
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.9e-24 119.8 178 41.6
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 4.3e-24 118.6 122 51.6
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.1e-23 116.3 134 46.3
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 1.7e-20 106.7 160 40.0
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 1.7e-17 96.7 140 37.9
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.9e-17 95.5 133 43.6
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.1e-16 94.0 134 43.3
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.6e-16 91.7 138 42.8
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.6e-16 91.7 135 43.0
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.6e-15 90.1 134 42.5
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 3.6e-15 89.0 73 56.2
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.7e-15 88.6 134 42.5
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-14 87.0 111 45.9
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 8.9e-14 84.3 62 62.9
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 2.9e-12 79.3 108 39.8
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 1.2e-10 73.9 596 21.6


User provided reference genes

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