Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 1.9e-107 392.9 252 100.0
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 8.2e-71 271.2 228 82.0
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 2.7e-66 256.1 228 71.1
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 2.3e-65 253.1 228 59.6
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 8.8e-65 251.1 228 71.5
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.1e-64 250.8 230 64.8
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 1.1e-64 250.8 228 69.7
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 3.3e-64 249.2 227 74.9
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 5.7e-64 248.4 229 62.4
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 9.7e-64 247.7 228 74.1
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 1.3e-63 247.3 233 66.5
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 1.3e-63 247.3 228 72.8
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.7e-63 246.9 235 62.1
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 2.8e-63 246.1 228 63.6
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 1.1e-62 244.2 228 70.2
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.1e-62 244.2 228 66.2
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 1.4e-62 243.8 228 66.2
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 1.4e-62 243.8 228 66.7
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 1.4e-62 243.8 228 58.8
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.8e-62 243.4 226 72.1
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 3.1e-62 242.7 228 71.1
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 4.1e-62 242.3 228 61.4
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 5.3e-62 241.9 224 75.4
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 7.0e-62 241.5 230 60.4
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 7.0e-62 241.5 228 75.4
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 1.2e-61 240.7 249 67.9
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 2.6e-61 239.6 228 68.4
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 3.5e-61 239.2 227 65.2
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 3.5e-61 239.2 227 67.4
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 3.5e-61 239.2 228 72.8
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 4.5e-61 238.8 228 70.6
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.5e-61 238.8 228 67.5
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.5e-61 238.8 228 67.5
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 4.5e-61 238.8 228 62.3
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 5.9e-61 238.4 268 65.7
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 7.7e-61 238.0 227 72.7
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 1.0e-60 237.7 228 68.0
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 1.3e-60 237.3 229 65.1
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 1.7e-60 236.9 228 67.5
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 2.2e-60 236.5 228 61.8
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.9e-60 236.1 246 70.7
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 3.8e-60 235.7 229 64.6
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 3.8e-60 235.7 228 67.1
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 6.5e-60 235.0 228 74.1
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 8.5e-60 234.6 224 67.4
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 2.5e-59 233.0 228 71.5
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 3.2e-59 232.6 228 62.3
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 1.2e-58 230.7 230 69.1
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 1.6e-58 230.3 227 63.9
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 1.6e-58 230.3 228 71.9
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 2.1e-58 229.9 228 72.4
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 4.7e-58 228.8 227 68.7
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 6.1e-58 228.4 228 70.6
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.4e-57 227.3 228 72.4
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 3.0e-57 226.1 227 68.3
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.9e-57 225.7 228 68.4
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 5.2e-57 225.3 229 61.1
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 6.7e-57 224.9 228 68.4
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.1e-56 224.2 228 60.1
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.0e-56 223.4 228 68.9
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 2.0e-56 223.4 229 73.8
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 3.3e-56 222.6 227 70.5
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 9.7e-56 221.1 228 64.9
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.3e-55 220.7 227 71.4
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 2.2e-55 219.9 224 67.4
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 6.3e-55 218.4 228 60.1
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 6.3e-55 218.4 258 61.6
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 3.1e-54 216.1 232 70.3
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 3.1e-54 216.1 228 68.9
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 9.1e-54 214.5 227 66.5
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.0e-53 213.4 227 61.7
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 2.6e-53 213.0 228 71.1
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 5.0e-52 208.8 230 52.2
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.9e-51 206.8 228 68.4
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.6e-50 203.8 228 57.5
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 3.6e-50 202.6 229 65.1
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 1.0e-49 201.1 228 63.2
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 1.0e-49 201.1 227 56.8
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 2.3e-49 199.9 211 73.0
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 2.3e-49 199.9 227 65.6
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 2.3e-49 199.9 228 65.8
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 3.0e-49 199.5 227 59.9
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 4.0e-49 199.1 227 69.6
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 4.0e-49 199.1 228 68.9
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 8.8e-49 198.0 228 68.4
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 8.8e-49 198.0 228 64.9
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.5e-48 197.2 227 65.6
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 2.0e-48 196.8 227 62.1
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 5.7e-48 195.3 227 64.8
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 1.3e-47 194.1 228 65.4
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.7e-47 193.7 227 55.5
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 1.7e-47 193.7 228 54.4
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 1.7e-47 193.7 227 68.7
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 3.7e-47 192.6 228 53.5
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 1.8e-46 190.3 229 49.3
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 3.1e-46 189.5 232 53.0
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 4.1e-46 189.1 228 50.4
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 5.3e-46 188.7 231 57.1
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.2e-45 187.6 231 57.6
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.0e-45 186.8 231 57.6
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 7.7e-45 184.9 330 47.3
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.0e-44 184.5 224 48.2
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.6e-42 177.2 234 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 1.0e-41 174.5 229 50.7
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 1.4e-41 174.1 227 63.9
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 1.4e-41 174.1 227 63.9
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.4e-41 174.1 232 56.9
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.8e-41 173.7 153 62.1
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 2.6e-40 169.9 227 63.0
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 5.7e-40 168.7 227 62.6
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 9.8e-40 167.9 228 61.4
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.3e-39 167.5 231 49.4
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 6.3e-39 165.2 227 59.5
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 8.3e-39 164.9 227 61.7
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.7e-36 157.1 227 50.7
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.2e-34 151.0 189 59.8
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 2.8e-34 149.8 228 52.6
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 6.1e-34 148.7 91 73.6
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.2e-26 124.4 223 42.6
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 8.9e-25 118.2 63 84.1
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.0e-24 117.1 227 38.3
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 2.2e-23 113.6 71 78.9
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.1e-22 109.4 227 36.6
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 5.4e-22 109.0 68 77.9
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 5.0e-20 102.4 227 36.1
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.1e-19 101.3 90 55.6
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 3.5e-13 79.7 173 35.8
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 2.5e-11 73.6 226 34.5
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.2e-08 64.7 40 77.5
BcaC08g45812 Brassica carinata HOM05D000068 ORTHO05D004691 7.1e-06 55.5 50 66.0


User provided reference genes

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