Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 2.4e-125 452.2 230 100.0
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 1.3e-102 376.7 230 82.2
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.7e-102 376.3 227 81.9
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 6.3e-102 374.4 227 81.9
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 7.7e-92 340.9 221 76.5
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 5.0e-91 338.2 221 73.8
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 8.5e-91 337.4 222 75.2
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 3.6e-89 332.0 230 70.9
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 2.3e-88 329.3 226 70.8
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 3.9e-88 328.6 219 73.1
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 3.3e-87 325.5 227 70.9
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 4.4e-87 325.1 221 70.6
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 1.3e-86 323.6 220 72.3
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.2e-86 322.8 220 70.9
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 2.8e-86 322.4 221 71.0
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 2.8e-86 322.4 231 69.7
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 6.3e-86 321.2 221 68.8
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 3.1e-85 318.9 221 68.8
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 5.3e-85 318.2 226 69.5
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 9.1e-85 317.4 221 67.4
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 2.6e-84 315.8 226 69.0
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 2.6e-84 315.8 220 67.7
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 3.5e-84 315.5 226 68.6
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 4.5e-84 315.1 227 65.6
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 4.5e-84 315.1 226 68.1
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 7.7e-84 314.3 222 67.6
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 1.3e-83 313.5 219 69.4
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.7e-83 313.2 227 67.8
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 3.8e-83 312.0 222 67.6
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 5.0e-83 311.6 226 68.6
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 6.5e-83 311.2 241 65.6
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 8.5e-83 310.8 225 66.7
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 3.2e-82 308.9 220 66.4
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 7.2e-82 307.8 220 65.9
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.2e-81 307.0 247 63.2
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 1.2e-81 307.0 223 67.3
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 3.6e-81 305.4 221 65.2
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 1.0e-80 303.9 226 64.2
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.4e-80 303.5 229 67.2
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 1.4e-80 303.5 222 67.6
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 1.4e-80 303.5 221 65.2
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.8e-80 303.1 224 64.3
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 2.3e-80 302.8 227 65.2
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 5.2e-80 301.6 229 65.5
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 6.7e-80 301.2 225 65.3
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.8e-80 300.8 226 63.3
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 8.8e-80 300.8 221 66.5
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 8.8e-80 300.8 226 63.7
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 2.0e-79 299.7 229 65.1
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 2.6e-79 299.3 220 65.0
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 2.6e-79 299.3 227 66.1
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.3e-79 298.9 226 63.7
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 3.3e-79 298.9 221 65.2
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 3.3e-79 298.9 227 64.8
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 7.5e-79 297.7 221 65.2
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 9.7e-79 297.4 227 63.4
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 9.7e-79 297.4 227 63.4
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.7e-78 296.6 221 67.4
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 2.2e-78 296.2 226 63.7
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 3.7e-78 295.4 230 63.9
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 3.7e-78 295.4 230 63.9
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 3.7e-78 295.4 228 64.9
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 3.7e-78 295.4 221 64.3
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 6.3e-78 294.7 221 67.0
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 8.2e-78 294.3 230 63.5
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.1e-77 293.9 230 63.5
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 1.8e-77 293.1 207 67.6
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 5.3e-77 291.6 221 64.7
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 7.0e-77 291.2 221 64.7
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 7.0e-77 291.2 230 63.5
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.0e-76 289.7 221 64.3
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 4.5e-76 288.5 227 62.6
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 1.3e-75 287.0 220 62.7
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.5e-74 283.5 225 64.0
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 4.2e-74 282.0 227 62.1
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-73 280.4 221 64.3
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 4.7e-73 278.5 220 61.4
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.8e-72 276.6 245 58.8
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.5e-71 273.5 237 58.2
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.4e-71 272.3 246 57.7
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 7.5e-71 271.2 231 58.9
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.8e-70 269.2 245 57.1
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 5.5e-66 255.0 232 57.3
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 1.6e-65 253.4 232 57.3
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 1.6e-65 253.4 242 55.8
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 2.3e-64 249.6 221 59.3
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 1.1e-61 240.7 223 54.3
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 9.2e-61 237.7 163 69.3
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 2.7e-60 236.1 170 65.3
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 1.7e-59 233.4 169 65.7
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 6.6e-59 231.5 143 76.2
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 8.6e-59 231.1 172 65.1
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 8.6e-59 231.1 163 66.9
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 2.8e-57 226.1 161 66.5
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.0e-55 219.9 239 54.0
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 2.6e-55 219.5 220 51.8
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.4e-55 219.2 161 66.5
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.7e-54 216.9 239 53.6
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 6.4e-54 214.9 227 51.5
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 3.2e-53 212.6 223 51.6
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 7.0e-53 211.5 226 49.1
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 3.9e-51 205.7 223 50.2
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 4.3e-50 202.2 173 59.5
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 4.7e-49 198.7 169 59.2
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 4.0e-48 195.7 169 58.6
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 5.1e-43 178.7 124 66.9
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 1.9e-42 176.8 124 66.1
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 1.5e-39 167.2 143 58.0
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 2.6e-39 166.4 249 39.8
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 3.2e-37 159.5 105 73.3
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 8.1e-33 144.8 116 62.9
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 1.1e-32 144.4 125 56.8
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 8.4e-30 134.8 146 51.4
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 4.2e-29 132.5 144 51.4
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 4.0e-24 115.9 106 57.5
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 4.0e-24 115.9 227 35.2
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 9.3e-21 104.8 68 72.1
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.8e-16 90.5 99 47.5
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.8e-16 90.5 99 47.5
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 1.4e-13 80.9 59 64.4
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 1.4e-13 80.9 59 64.4
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 2.5e-10 70.1 47 70.2
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 7.6e-07 58.5 184 26.1


User provided reference genes

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