Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.6e-231 805.8 424 100.0
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.4e-179 633.3 425 76.7
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 8.4e-177 624.0 399 79.2
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 3.8e-161 572.0 418 71.1
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 3.0e-134 482.6 428 60.7
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.0e-133 479.9 393 64.9
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.3e-132 477.2 416 61.5
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.7e-132 476.9 417 59.7
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.7e-132 476.9 418 61.2
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 1.1e-131 474.2 417 60.7
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.1e-131 474.2 416 60.3
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.4e-131 473.8 416 60.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.8e-131 473.4 414 61.4
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.8e-131 473.4 416 60.3
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.3e-131 471.9 430 58.4
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 7.0e-131 471.5 429 57.8
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.2e-130 470.7 414 61.1
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.4e-130 469.2 414 60.6
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.0e-129 467.6 427 57.4
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.3e-129 467.2 419 59.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.3e-129 467.2 415 59.8
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.2e-129 466.5 437 57.7
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 3.8e-129 465.7 421 59.6
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 8.5e-129 464.5 429 59.7
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 3.2e-128 462.6 414 59.9
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.8e-126 456.8 417 56.4
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.3e-126 456.4 434 58.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.1e-125 454.1 342 69.6
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.7e-124 450.3 411 58.9
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 3.7e-124 449.1 412 58.3
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 3.7e-124 449.1 442 54.1
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.4e-123 447.2 414 58.2
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.4e-123 446.4 424 56.6
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.4e-123 446.4 414 58.0
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 5.3e-123 445.3 415 58.1
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.2e-122 444.1 415 58.6
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 2.9e-121 439.5 413 56.2
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.9e-120 436.8 414 56.3
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.5e-120 436.4 410 56.8
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 3.2e-120 436.0 411 56.4
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.2e-120 436.0 414 55.8
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 3.2e-120 436.0 427 56.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 5.5e-120 435.3 414 55.6
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 7.2e-120 434.9 473 51.4
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 2.1e-119 433.3 428 56.1
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 8.0e-119 431.4 414 56.3
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.8e-118 430.3 412 56.1
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 6.7e-118 428.3 431 53.4
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 6.7e-118 428.3 412 55.1
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 2.0e-117 426.8 440 53.2
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.0e-117 426.8 411 56.0
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 2.6e-117 426.4 422 56.2
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 2.6e-117 426.4 414 55.3
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.6e-117 426.4 413 55.2
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 5.7e-117 425.2 415 55.9
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 5.7e-117 425.2 413 55.7
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 9.7e-117 424.5 408 56.4
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 9.7e-117 424.5 422 55.7
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 9.7e-117 424.5 418 55.0
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 9.7e-117 424.5 440 53.0
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.7e-116 423.7 419 56.8
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 2.2e-116 423.3 419 55.8
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 2.2e-116 423.3 412 55.3
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 2.8e-116 422.9 414 55.3
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 3.7e-116 422.5 408 56.1
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 3.7e-116 422.5 430 54.7
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.4e-115 420.6 413 56.4
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 4.1e-115 419.1 362 62.4
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 5.3e-115 418.7 429 54.3
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 5.9e-114 415.2 433 53.8
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 7.7e-114 414.8 429 54.5
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.3e-113 414.1 433 53.6
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.2e-113 413.3 433 53.6
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 6.5e-113 411.8 430 54.0
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.1e-112 411.0 412 54.6
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 9.4e-112 407.9 432 52.3
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 3.6e-111 406.0 449 52.1
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 4.7e-111 405.6 368 59.5
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 6.1e-111 405.2 440 51.6
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 3.7e-108 396.0 452 51.5
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.7e-108 396.0 374 56.4
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.8e-108 395.6 348 62.1
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.1e-107 394.4 348 60.6
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.1e-107 392.9 424 51.2
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 5.4e-107 392.1 445 51.5
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 5.9e-106 388.7 418 51.4
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.3e-105 387.5 422 52.4
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 5.0e-105 385.6 381 55.4
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.2e-103 380.9 434 50.7
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.1e-103 380.2 399 52.1
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 2.8e-103 379.8 371 56.6
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 2.3e-102 376.7 427 50.8
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.3e-100 370.9 368 53.8
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.7e-100 369.4 370 57.8
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.2e-98 364.4 424 48.8
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 2.0e-98 363.6 422 49.5
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 2.0e-98 363.6 366 56.3
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 5.9e-98 362.1 428 49.3
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 7.8e-98 361.7 269 68.8
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-97 360.1 279 68.5
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.2e-95 354.4 341 57.8
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-93 347.4 279 67.0
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.0e-93 347.1 323 58.2
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 2.9e-92 343.2 290 61.7
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.6e-90 337.4 356 54.2
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 2.2e-84 317.0 361 52.4
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 4.1e-83 312.8 343 50.4
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 3.9e-81 306.2 468 42.5
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-76 290.0 362 49.2
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.4e-67 260.4 221 60.6
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.9e-57 226.5 427 36.3
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 4.0e-54 216.5 443 35.9
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 9.0e-54 215.3 228 52.6
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 1.9e-51 207.6 128 78.9
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.5e-50 203.4 136 73.5
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 8.4e-44 182.2 422 31.3
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 2.5e-43 180.6 124 71.8
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 9.6e-40 168.7 342 34.8
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 5.7e-24 116.3 88 64.8
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.3e-23 115.2 100 62.0
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 9.1e-22 109.0 89 64.0
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 9.1e-22 109.0 82 67.1
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 9.1e-22 109.0 80 68.8
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.0e-17 95.5 114 40.4
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 7.4e-16 89.4 74 52.7
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 9.1e-14 82.4 153 35.3
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.1e-10 71.2 86 48.8


User provided reference genes

Program Settings