Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21131 Beta vulgaris HOM05D001194 ORTHO05D005909 5.3e-60 234.2 120 100.0
EL10Ac9g21120 Beta vulgaris HOM05D001194 ORTHO05D005909 9.7e-54 213.4 108 100.0
Ah.01g004470 Amaranthus hybridus HOM05D001194 ORTHO05D005909 1.0e-50 203.4 113 90.3
Sc12g0009890 Simmondsia chinensis HOM05D001194 ORTHO05D005909 5.5e-49 197.6 113 86.7
AUR62038337 Chenopodium quinoa HOM05D001194 ORTHO05D005909 9.4e-49 196.8 105 96.2
GSVIVG01016891001 Vitis vinifera HOM05D001194 ORTHO05D005909 3.6e-48 194.9 113 86.7
AUR62023909 Chenopodium quinoa HOM05D001194 ORTHO05D005909 6.1e-48 194.1 104 96.2
TAR626G1853 Trochodendron aralioides HOM05D001194 ORTHO05D005909 3.9e-47 191.4 113 83.2
Nn6g35406 Nelumbo nucifera HOM05D001194 ORTHO05D005909 8.8e-47 190.3 113 84.1
Hund00742 Selenicereus undatus HOM05D001194 ORTHO05D005909 1.5e-46 189.5 104 90.4
Atru.chr1.3635 Acer truncatum HOM05D001194 ORTHO05D005909 2.0e-46 189.1 113 83.2
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 3.3e-46 188.3 113 83.2
Dinv37933 Davidia involucrata HOM05D001194 ORTHO05D005909 3.3e-46 188.3 113 83.2
QL05p015826 Quercus lobata HOM05D001194 ORTHO05D005909 3.3e-46 188.3 112 82.1
Manes.04G137500 Manihot esculenta HOM05D001194 ORTHO05D005909 4.3e-46 188.0 113 83.2
Nn8g38927 Nelumbo nucifera HOM05D001194 ORTHO05D005909 5.7e-46 187.6 113 83.2
CANSAT56G1148 Cannabis sativa HOM05D001194 ORTHO05D005909 1.3e-45 186.4 108 85.2
Ca_23295_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 1.7e-45 186.0 112 83.9
CsaV3_3G044050 Cucumis sativus L. HOM05D001194 ORTHO05D005909 2.2e-45 185.7 113 82.3
Eucgr.J02887 Eucalyptus grandis HOM05D001194 ORTHO05D005909 2.2e-45 185.7 113 81.4
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 2.2e-45 185.7 111 82.9
Psat4g194400 Pisum sativum HOM05D001194 ORTHO05D005909 2.2e-45 185.7 113 82.3
Dinv30399 Davidia involucrata HOM05D001194 ORTHO05D005909 2.8e-45 185.3 108 84.3
Lalb_Chr04g0263101 Lupinus albus HOM05D001194 ORTHO05D005909 3.7e-45 184.9 113 82.3
arahy.Tifrunner.gnm1.ann1.2JHZ20 Arachis hypogaea HOM05D001194 ORTHO05D005909 8.2e-45 183.7 113 79.6
arahy.Tifrunner.gnm1.ann1.U81MKX Arachis hypogaea HOM05D001194 ORTHO05D005909 8.2e-45 183.7 113 79.6
CiPaw.01G227200 Carya illinoinensis HOM05D001194 ORTHO05D005909 1.1e-44 183.3 113 78.8
ClCG07G013590 Citrullus lanatus HOM05D001194 ORTHO05D005909 1.4e-44 183.0 107 84.1
Cfa003606 Carpinus fangiana HOM05D001194 ORTHO05D005909 1.8e-44 182.6 108 82.4
Gohir.A10G062100 Gossypium hirsutum HOM05D001194 ORTHO05D005909 1.8e-44 182.6 113 78.8
Gohir.D10G063800 Gossypium hirsutum HOM05D001194 ORTHO05D005909 1.8e-44 182.6 113 78.8
Gorai.011G067700 Gossypium raimondii HOM05D001194 ORTHO05D005909 1.8e-44 182.6 113 78.8
PGR102G0345 Punica granatum HOM05D001194 ORTHO05D005909 1.8e-44 182.6 113 82.3
Sed0016739 Sechium edule HOM05D001194 ORTHO05D005909 1.8e-44 182.6 113 80.5
VMungo0331G0238 Vigna mungo HOM05D001194 ORTHO05D005909 1.8e-44 182.6 113 80.5
TWI79G1226 Tripterygium wilfordii HOM05D001194 ORTHO05D005909 2.4e-44 182.2 113 82.3
Haze_15919 Corylus avellana HOM05D001194 ORTHO05D005909 3.1e-44 181.8 108 81.5
Aqoxy7G01307 Aquilegia oxysepala HOM05D001194 ORTHO05D005909 4.1e-44 181.4 113 78.8
Sabra01G0156300 Salix brachista HOM05D001194 ORTHO05D005909 5.3e-44 181.0 112 78.6
Medtr8g015600 Medicago truncatula HOM05D001194 ORTHO05D005909 6.9e-44 180.6 113 80.5
Potri.001G199600 Populus trichocarpa HOM05D001194 ORTHO05D005909 6.9e-44 180.6 113 78.8
Glyma.07G012500 Glycine max HOM05D001194 ORTHO05D005909 9.1e-44 180.3 113 78.8
Glyma.08G196200 Glycine max HOM05D001194 ORTHO05D005909 9.1e-44 180.3 113 78.8
Prupe.3G052600 Prunus persica HOM05D001194 ORTHO05D005909 2.0e-43 179.1 113 77.9
Sed0012613 Sechium edule HOM05D001194 ORTHO05D005909 2.0e-43 179.1 113 79.6
Thecc.06G107800 Theobroma cacao HOM05D001194 ORTHO05D005909 2.0e-43 179.1 113 77.0
Duzib235G0439 Durio zibethinus HOM05D001194 ORTHO05D005909 2.6e-43 178.7 113 77.0
Phvul.010G142000 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 2.6e-43 178.7 113 77.9
VMungo0331G0168 Vigna mungo HOM05D001194 ORTHO05D005909 2.6e-43 178.7 113 77.9
Phvul.010G141900 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 4.5e-43 177.9 113 77.9
MD09G1196200 Malus domestica HOM05D001194 ORTHO05D005909 1.3e-42 176.4 113 76.1
Lj3g0000235 Lotus japonicus HOM05D001194 ORTHO05D005909 1.7e-42 176.0 108 79.6
RcHm_v2.0_Chr2g0142481 Rosa chinensis HOM05D001194 ORTHO05D005909 2.2e-42 175.6 113 77.0
RcHm_v2.0_Chr2g0142511 Rosa chinensis HOM05D001194 ORTHO05D005909 2.2e-42 175.6 113 77.0
COL.COLO4_30608 Corchorus olitorius HOM05D001194 ORTHO05D005909 3.8e-42 174.9 113 73.5
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 6.5e-42 174.1 111 74.8
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 6.5e-42 174.1 111 74.8
FAN09G1927 Fragaria x ananassa HOM05D001194 ORTHO05D005909 6.5e-42 174.1 113 76.1
PSO063G4370 Papaver somniferum HOM05D001194 ORTHO05D005909 3.2e-41 171.8 113 77.0
PSO832G2057 Papaver somniferum HOM05D001194 ORTHO05D005909 3.2e-41 171.8 113 77.0
CSS0021774 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 5.5e-41 171.0 113 78.8
vmacro18821 Vaccinium macrocarpon HOM05D001194 ORTHO05D005909 5.5e-41 171.0 113 78.8
FAN02G4259 Fragaria x ananassa HOM05D001194 ORTHO05D005909 9.4e-41 170.2 113 75.2
Nitab4.5_0000316g0210 Nicotiana tabacum HOM05D001194 ORTHO05D005909 9.4e-41 170.2 108 82.4
Nitab4.5_0001543g0050 Nicotiana tabacum HOM05D001194 ORTHO05D005909 9.4e-41 170.2 108 82.4
Lj5A49T38 Lonicera japonica HOM05D001194 ORTHO05D005909 2.7e-40 168.7 113 77.9
CAN.G410.38 Capsicum annuum HOM05D001194 ORTHO05D005909 3.6e-40 168.3 113 79.6
PGSC0003DMG402006819 Solanum tuberosum HOM05D001194 ORTHO05D005909 3.6e-40 168.3 113 79.6
Peaxi162Scf00087g00133 Petunia axillaris HOM05D001194 ORTHO05D005909 7.9e-40 167.2 113 78.8
AL1G59660 Arabidopsis lyrata HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
AT1G51720 Arabidopsis thaliana HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
BcaB07g33628 Brassica carinata HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
A08p02540 Brassica napus HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
C03p90270 Brassica napus HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
BolC3t21349H Brassica oleracea HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
BraA08t32294Z Brassica rapa HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
Carub.0001s4059 Capsella rubella HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
CARHR041880 Cardamine hirsuta HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
Thhalv10011312m.g Eutrema salsugineum HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
Sp1g38360 Schrenkiella parvula HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
THA.LOC104805919 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 1.0e-39 166.8 113 73.5
A06p02290 Brassica napus HOM05D001194 ORTHO05D005909 1.8e-39 166.0 113 73.5
BraA06t23435Z Brassica rapa HOM05D001194 ORTHO05D005909 1.8e-39 166.0 113 73.5
Actinidia21741 Actinidia chinensis HOM05D001194 ORTHO05D005909 3.0e-39 165.2 113 76.1
Aa31LG10G3090 Aethionema arabicum HOM05D001194 ORTHO05D005909 3.9e-39 164.9 113 72.6
BcaC08g43332 Brassica carinata HOM05D001194 ORTHO05D005909 3.9e-39 164.9 113 72.6
C06p06880 Brassica napus HOM05D001194 ORTHO05D005909 3.9e-39 164.9 113 72.6
BolC6t35794H Brassica oleracea HOM05D001194 ORTHO05D005909 5.1e-39 164.5 113 72.6
MSTRG.22605 Avicennia marina HOM05D001194 ORTHO05D005909 6.7e-39 164.1 113 77.9
Duzib160G0082 Durio zibethinus HOM05D001194 ORTHO05D005909 6.7e-39 164.1 129 65.1
Solyc01g068210.3 Solanum lycopersicum HOM05D001194 ORTHO05D005909 6.7e-39 164.1 113 77.0
Sopen01g030150 Solanum pennellii HOM05D001194 ORTHO05D005909 6.7e-39 164.1 113 77.0
MBI04_g06219_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D005909 1.1e-38 163.3 113 69.0
CSS0002183 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 2.6e-38 162.2 113 73.5
CSS0036616 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 2.6e-38 162.2 113 73.5
Cc04_g02210 Coffea canephora HOM05D001194 ORTHO05D005909 5.7e-38 161.0 108 76.9
Migut.D00978 Erythranthe guttata HOM05D001194 ORTHO05D005909 7.4e-38 160.6 113 77.0
SGA_v2.0_scaffold71G23749 Striga asiatica HOM05D001194 ORTHO05D005909 9.7e-38 160.2 113 75.2
BcaC01g01292 Brassica carinata HOM05D001194 ORTHO05D005909 1.7e-37 159.5 114 71.1
unitig_748.g7452 Utricularia gibba HOM05D001194 ORTHO05D005909 3.7e-37 158.3 113 75.2
Lsat_1_v5_gn_4_96000 Lactuca sativa HOM05D001194 ORTHO05D005909 1.1e-36 156.8 113 69.9
HPP92_023231 Vanilla planifolia HOM05D001194 ORTHO05D005909 2.4e-36 155.6 113 66.4
DCAR_031424 Daucus carota HOM05D001194 ORTHO05D005909 4.1e-36 154.8 113 72.6
ECA232G0548 Erigeron canadensis HOM05D001194 ORTHO05D005909 5.3e-36 154.5 113 67.3
HanXRQChr09g0276311 Helianthus annuus HOM05D001194 ORTHO05D005909 1.2e-35 153.3 116 68.1
Os01g0558200 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D005909 3.5e-35 151.8 107 71.0
MELO3C013031.2 Cucumis melo HOM05D001194 ORTHO05D005909 1.7e-34 149.4 88 84.1
CDE05G0449 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 6.5e-34 147.5 108 64.8
Actinidia32131 Actinidia chinensis HOM05D001194 ORTHO05D005909 7.2e-33 144.1 103 75.7
ATR0789G185 Amborella trichopoda HOM05D001194 ORTHO05D005909 1.6e-32 142.9 113 61.9
FAN05G2672 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.8e-31 139.4 88 77.3
Rhsim08G0231400 Rhododendron simsii HOM05D001194 ORTHO05D005909 2.3e-31 139.0 142 56.3
FAN14G3358 Fragaria x ananassa HOM05D001194 ORTHO05D005909 3.9e-31 138.3 88 77.3
Oeu039981.1 Olea europaea HOM05D001194 ORTHO05D005909 1.7e-29 132.9 88 80.7
Glyma.09G152800 Glycine max HOM05D001194 ORTHO05D005909 3.7e-29 131.7 115 65.2
AagrBONN_evm.TU.Sc2ySwM_362.2881 Anthoceros agrestis HOM05D001194 ORTHO05D005909 1.6e-24 116.3 108 50.9
SMO119G0344 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 4.7e-24 114.8 108 51.9
SMO163G0008 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 4.7e-24 114.8 108 51.9
SEGI_14715 Sequoiadendron giganteum HOM05D001194 ORTHO05D005909 1.2e-22 110.2 113 54.0
Mapoly0010s0062 Marchantia polymorpha HOM05D001194 ORTHO05D005909 7.5e-22 107.5 108 50.9
SMO347G0060 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 1.4e-20 103.2 108 48.1
Potri.001G193600 Populus trichocarpa HOM05D001194 ORTHO05D005909 1.8e-20 102.8 81 66.7
Pp3c14_22460 Physcomitrium patens HOM05D001194 ORTHO05D005909 3.1e-20 102.1 108 47.2
Pp3c2_4200 Physcomitrium patens HOM05D001194 ORTHO05D005909 9.1e-20 100.5 108 48.1
arahy.Tifrunner.gnm1.ann1.YRZZ7C Arachis hypogaea HOM05D001194 ORTHO05D005909 3.6e-16 88.6 63 71.4
TPR.G8761 Trifolium pratense HOM05D001194 ORTHO05D005909 3.6e-16 88.6 56 78.6
MD17G1177000 Malus domestica HOM05D001194 ORTHO05D005909 1.8e-15 86.3 57 71.9
arahy.Tifrunner.gnm1.ann1.D8HU13 Arachis hypogaea HOM05D001194 ORTHO05D005909 6.8e-15 84.3 73 61.6
THA.LOC104817936 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 2.4e-12 75.9 53 69.8
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.7e-11 72.4 45 77.8
arahy.Tifrunner.gnm1.ann1.H04EJ4 Arachis hypogaea HOM05D001194 ORTHO05D005044 1.3e-10 70.1 45 75.6
arahy.Tifrunner.gnm1.ann1.K82YC3 Arachis hypogaea HOM05D004293 ORTHO05D005044 1.3e-10 70.1 45 75.6
arahy.Tifrunner.gnm1.ann1.4DL9G8 Arachis hypogaea HOM05D004293 ORTHO05D005044 1.7e-10 69.7 45 75.6
arahy.Tifrunner.gnm1.ann1.CV7JLA Arachis hypogaea HOM05D004293 ORTHO05D005044 7.2e-09 64.3 45 71.1
CiPaw.02G142100 Carya illinoinensis HOM05D001194 ORTHO05D005909 8.0e-08 60.8 37 81.1
DCAR_028275 Daucus carota HOM05D001194 ORTHO05D005909 1.0e-07 60.5 71 52.1
FvH4_6g32960 Fragaria vesca HOM05D001194 ORTHO05D005909 1.0e-07 60.5 46 67.4
Ciclev10025274m.g Citrus clementina HOM05D001194 ORTHO05D005909 5.2e-07 58.2 36 80.6
MD17G1176900 Malus domestica HOM05D001194 ORTHO05D005909 2.0e-06 56.2 39 69.2


User provided reference genes

Program Settings