Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 4.4e-156 554.7 300 100.0
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.3e-134 483.4 300 87.3
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.1e-134 482.6 300 85.0
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.8e-123 445.3 281 85.4
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 3.5e-113 412.1 300 73.7
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 5.3e-109 398.3 300 71.3
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 3.2e-106 389.0 300 70.0
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 5.5e-106 388.3 300 68.0
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 7.2e-106 387.9 296 69.9
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.2e-105 387.1 296 70.9
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.2e-105 387.1 300 69.3
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.6e-105 386.7 296 70.9
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.5e-105 385.6 294 69.0
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.5e-105 385.6 294 69.0
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 6.1e-105 384.8 290 71.7
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.8e-104 383.3 290 70.7
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.3e-104 382.9 289 71.3
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 8.7e-104 380.9 299 68.2
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 8.7e-104 380.9 294 70.7
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.1e-103 380.6 300 67.7
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 1.5e-103 380.2 299 67.6
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.9e-103 379.8 300 69.3
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.9e-103 379.8 299 66.9
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.5e-103 379.4 300 68.3
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 4.3e-103 378.6 289 70.9
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 7.4e-103 377.9 299 65.9
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 7.4e-103 377.9 299 65.9
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 9.7e-103 377.5 290 68.6
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 9.7e-103 377.5 290 68.6
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 1.3e-102 377.1 300 66.7
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.3e-102 377.1 300 67.3
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.6e-102 376.7 300 67.3
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.6e-102 376.7 299 67.9
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 2.2e-102 376.3 297 67.7
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 2.8e-102 375.9 299 66.9
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 3.7e-102 375.6 281 71.2
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 3.7e-102 375.6 296 67.6
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 4.8e-102 375.2 299 67.9
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 4.8e-102 375.2 281 71.9
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.8e-102 375.2 292 67.8
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 6.3e-102 374.8 296 67.9
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 8.2e-102 374.4 298 67.8
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 8.2e-102 374.4 299 65.9
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-101 373.6 297 67.7
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-101 373.6 297 67.3
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 4.1e-101 372.1 297 66.0
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 4.1e-101 372.1 300 67.0
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.3e-101 371.7 297 65.7
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 6.9e-101 371.3 296 66.6
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 1.2e-100 370.5 290 69.0
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.0e-100 369.8 300 65.7
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 3.4e-100 369.0 301 66.4
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 3.4e-100 369.0 296 67.6
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.4e-100 369.0 300 65.3
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.5e-100 368.6 297 65.3
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 4.5e-100 368.6 300 65.7
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 4.5e-100 368.6 300 65.7
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 4.5e-100 368.6 300 65.7
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 7.7e-100 367.9 300 65.7
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.3e-99 367.1 300 65.3
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.7e-99 366.7 299 66.9
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 2.2e-99 366.3 301 66.1
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 2.2e-99 366.3 296 66.2
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 2.9e-99 365.9 300 65.3
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 2.9e-99 365.9 289 69.2
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.4e-98 363.6 301 65.1
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.4e-98 363.6 296 67.9
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.4e-98 363.6 290 67.6
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 5.5e-98 361.7 296 67.6
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 7.2e-98 361.3 290 66.6
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.2e-97 360.5 301 64.1
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 3.6e-97 359.0 298 65.1
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 4.6e-97 358.6 300 64.3
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 7.9e-97 357.8 290 67.2
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.0e-96 357.5 301 63.5
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.0e-96 357.5 296 65.2
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 1.4e-96 357.1 300 63.7
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.8e-96 356.7 300 67.7
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.8e-96 356.7 297 66.3
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 2.3e-96 356.3 289 67.5
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.3e-96 356.3 299 64.5
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 5.1e-96 355.1 289 65.4
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.7e-96 354.8 300 64.0
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.8e-96 354.4 289 67.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 2.5e-95 352.8 298 63.1
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 2.5e-95 352.8 301 63.1
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 5.7e-95 351.7 311 60.5
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.7e-94 350.1 304 61.5
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 2.8e-94 349.4 306 61.1
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 3.7e-94 349.0 305 61.0
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 1.1e-93 347.4 304 60.9
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.4e-93 346.3 294 63.6
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 2.4e-93 346.3 296 62.8
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.3e-91 340.5 301 61.8
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 2.9e-91 339.3 300 61.7
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.9e-91 339.3 301 61.5
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 6.5e-91 338.2 295 64.1
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.1e-89 331.6 281 65.8
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 2.3e-88 329.7 300 60.7
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.1e-87 327.4 300 59.7
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.3e-86 323.9 299 58.2
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 4.8e-86 322.0 293 60.1
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.1e-85 318.9 281 64.1
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.0e-83 314.3 298 59.4
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.3e-83 313.9 273 63.4
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 2.6e-79 299.7 200 84.5
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 9.4e-74 281.2 280 58.6
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 5.0e-67 258.8 302 50.3
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.5e-66 257.3 231 63.2
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 2.3e-64 250.0 298 51.3
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 7.5e-63 245.0 195 66.2
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.7e-60 236.5 291 49.1
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 4.5e-60 235.7 291 49.1
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.9e-60 235.3 190 68.9
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 7.8e-52 208.4 163 66.9
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 1.1e-50 204.5 336 43.5
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.2e-49 201.1 159 64.8
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.6e-47 193.4 191 55.5
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 4.6e-44 182.6 139 66.9
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.3e-43 181.0 289 42.2
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 2.1e-41 173.7 138 66.7
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.6e-36 157.5 246 46.7
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 3.1e-32 143.3 201 45.3
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.9e-29 134.0 186 45.7
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 2.4e-29 133.7 179 42.5
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 7.1e-29 132.1 115 64.3
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 4.6e-28 129.4 158 50.0
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 4.6e-28 129.4 107 67.3
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.9e-26 124.0 95 68.4
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.8e-22 109.8 96 63.5
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 3.9e-19 99.8 290 30.3
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 4.8e-17 92.8 50 86.0
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 3.4e-15 86.7 302 29.8
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 4.9e-14 82.8 60 63.3
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.9e-14 82.8 86 51.2
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.9e-13 80.9 40 87.5
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.6e-12 77.8 175 34.9
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.6e-12 77.8 84 58.3
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 5.3e-08 62.8 150 33.3


User provided reference genes

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