Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 1.6e-172 609.4 317 100.0
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 4.1e-168 594.7 317 97.5
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 2.7e-143 512.3 322 81.4
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 1.0e-131 473.8 321 75.7
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 8.3e-129 464.2 321 73.8
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 3.5e-127 458.8 249 90.4
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 7.8e-127 457.6 321 72.6
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.3e-126 456.8 249 90.0
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 5.0e-126 454.9 322 72.4
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 6.2e-124 448.0 330 71.2
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 1.8e-123 446.4 322 72.0
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 2.3e-123 446.0 342 71.1
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.0e-123 445.3 330 70.9
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 2.0e-122 443.0 332 68.7
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 1.7e-121 439.9 337 68.0
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 3.7e-121 438.7 328 70.4
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 3.7e-121 438.7 338 69.5
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 8.3e-121 437.6 337 69.7
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 1.1e-120 437.2 328 68.3
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 1.4e-120 436.8 331 70.4
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 1.9e-120 436.4 332 68.7
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 2.4e-120 436.0 324 68.8
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 2.4e-120 436.0 335 69.3
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 2.4e-120 436.0 334 67.7
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 2.4e-120 436.0 322 68.9
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 3.2e-120 435.6 326 70.6
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 4.1e-120 435.3 337 69.4
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.4e-120 434.9 320 71.6
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 5.4e-120 434.9 323 70.3
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 7.0e-120 434.5 334 70.7
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 9.2e-120 434.1 331 69.5
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 2.0e-119 433.0 331 68.3
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 2.0e-119 433.0 337 67.4
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 4.6e-119 431.8 333 68.5
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 7.8e-119 431.0 332 69.3
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 1.0e-118 430.6 333 67.9
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.0e-118 430.6 334 69.8
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 1.7e-118 429.9 304 71.4
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 1.7e-118 429.9 321 67.6
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 3.9e-118 428.7 330 68.5
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 5.0e-118 428.3 331 67.4
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 5.0e-118 428.3 333 68.5
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 6.6e-118 427.9 330 66.7
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 6.6e-118 427.9 273 75.8
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.6e-118 427.9 331 68.0
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 8.6e-118 427.6 325 68.3
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 8.6e-118 427.6 326 67.5
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 8.6e-118 427.6 300 72.3
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 1.1e-117 427.2 331 67.1
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 1.5e-117 426.8 317 68.5
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.9e-117 426.4 333 67.3
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.9e-117 426.4 332 68.4
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 2.5e-117 426.0 335 66.9
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 3.3e-117 425.6 328 66.8
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 3.3e-117 425.6 329 67.2
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 7.3e-117 424.5 332 67.2
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 1.2e-116 423.7 329 66.9
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 2.8e-116 422.5 333 67.3
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 4.7e-116 421.8 325 68.6
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 1.8e-115 419.9 333 68.8
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 2.3e-115 419.5 265 76.6
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 2.3e-115 419.5 336 67.3
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 4.0e-115 418.7 266 77.8
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 8.9e-115 417.5 311 68.5
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 1.2e-114 417.2 333 64.6
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 2.0e-114 416.4 330 67.3
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 2.0e-114 416.4 321 67.3
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 3.4e-114 415.6 299 68.9
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 3.4e-114 415.6 251 79.3
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 4.4e-114 415.2 324 67.9
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 7.5e-114 414.5 380 60.8
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 9.8e-114 414.1 329 65.7
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 2.9e-113 412.5 321 67.6
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 2.9e-113 412.5 249 79.1
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 3.7e-113 412.1 267 74.9
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 4.9e-113 411.8 324 66.7
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 6.4e-113 411.4 345 62.6
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 4.6e-111 405.2 341 63.6
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 6.0e-111 404.8 315 66.7
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 1.0e-110 404.1 320 67.2
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 2.3e-110 402.9 328 65.2
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 3.0e-110 402.5 324 64.5
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 2.1e-108 396.4 249 75.5
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 2.8e-108 396.0 321 63.9
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 2.8e-108 396.0 321 63.9
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 3.6e-108 395.6 321 63.6
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 3.6e-108 395.6 321 63.6
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 6.2e-108 394.8 256 73.0
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 1.8e-107 393.3 321 63.6
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 2.3e-107 392.9 292 72.6
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 1.2e-106 390.6 321 63.9
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 2.0e-106 389.8 311 65.0
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 3.4e-106 389.0 317 64.0
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 3.4e-106 389.0 406 54.2
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 3.8e-105 385.6 257 71.6
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 7.1e-104 381.3 312 62.5
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 7.1e-104 381.3 254 73.2
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 1.6e-103 380.2 254 72.4
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 5.6e-101 371.7 313 60.7
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 7.3e-101 371.3 316 61.1
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 9.6e-101 370.9 263 72.2
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 1.8e-99 366.7 326 60.4
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 2.4e-99 366.3 248 70.6
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 1.5e-98 363.6 300 64.7
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 4.4e-98 362.1 335 60.3
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 2.4e-96 356.3 294 62.9
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.2e-92 341.7 346 57.8
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 2.4e-91 339.7 241 66.4
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 7.9e-87 324.7 288 58.3
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 3.9e-86 322.4 322 54.7
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 1.2e-79 300.8 331 53.5
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 2.3e-78 296.6 231 65.8
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 6.2e-76 288.5 312 55.1
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 5.8e-74 282.0 152 94.7
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 6.5e-65 251.9 204 65.7
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 8.2e-60 235.0 208 65.9
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 1.3e-57 227.6 207 63.3
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 3.8e-57 226.1 279 44.4
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 5.0e-57 225.7 219 55.7
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 9.4e-56 221.5 266 43.6
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 1.1e-53 214.5 203 57.6
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 2.2e-52 210.3 109 92.7
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 2.8e-52 209.9 236 44.5
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 5.3e-51 205.7 270 41.5
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.3e-51 205.7 126 80.2
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.3e-51 205.7 126 80.2
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 5.5e-48 195.7 301 39.5
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 5.5e-48 195.7 170 61.2
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 2.7e-47 193.4 124 74.2
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 1.3e-41 174.5 254 37.8
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 2.1e-39 167.2 247 39.7
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 4.2e-32 142.9 90 78.9
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 6.1e-31 139.0 100 65.0
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 3.5e-26 123.2 135 52.6
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 4.5e-26 122.9 215 32.6
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 2.3e-25 120.6 101 64.4
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 1.5e-24 117.9 65 83.1
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 5.5e-24 115.9 65 81.5
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 7.2e-24 115.5 88 63.6
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 1.2e-23 114.8 65 81.5
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 9.2e-19 98.6 154 41.6
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 3.5e-18 96.7 57 78.9
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 4.5e-18 96.3 89 57.3
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 4.5e-18 96.3 89 57.3
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 4.5e-18 96.3 89 57.3
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 2.5e-16 90.5 52 82.7
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 7.3e-16 89.0 50 82.0
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 6.1e-15 85.9 47 83.0
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 6.8e-14 82.4 77 59.7
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 6.8e-14 82.4 47 83.0
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 2.0e-10 70.9 161 36.6
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 7.8e-10 68.9 46 67.4


User provided reference genes

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