Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1674.4 851 100.0
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 0.0e+00 1389.4 836 83.1
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 0.0e+00 1309.3 833 79.6
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 0.0e+00 1275.4 792 81.7
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 4.7e-304 1047.7 800 68.8
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 4.0e-303 1044.6 856 63.1
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 1.3e-298 1029.6 868 63.6
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 1.7e-298 1029.2 868 63.6
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 5.0e-298 1027.7 856 63.3
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 1.4e-292 1009.6 859 63.7
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 1.9e-292 1009.2 855 62.3
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 5.1e-290 1001.1 868 62.0
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 2.1e-288 995.7 896 60.6
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 1.4e-287 993.0 857 61.3
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.0e-287 991.5 851 61.7
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.5e-286 989.6 857 62.0
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 2.0e-286 989.2 857 60.8
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 1.7e-285 986.1 855 61.5
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 2.2e-285 985.7 853 61.1
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 2.2e-285 985.7 857 61.7
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 2.9e-285 985.3 857 61.6
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 3.8e-285 984.9 856 60.9
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 1.9e-284 982.6 857 61.4
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 3.2e-284 981.9 853 60.7
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 9.2e-284 980.3 854 60.2
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 1.2e-283 979.9 823 62.8
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 1.2e-283 979.9 850 60.7
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 2.7e-283 978.8 855 61.3
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 3.9e-282 974.9 814 63.4
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 6.6e-282 974.2 857 60.1
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 8.7e-282 973.8 824 62.7
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 1.2e-280 969.9 855 60.6
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 2.8e-280 968.8 859 60.1
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 4.7e-280 968.0 860 59.8
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 8.1e-280 967.2 860 59.7
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 2.4e-279 965.7 850 60.9
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 3.1e-279 965.3 859 60.0
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 5.2e-279 964.5 863 60.8
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 9.0e-279 963.8 859 60.3
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 1.5e-278 963.0 859 58.9
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 2.6e-278 962.2 849 60.4
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 3.4e-278 961.8 859 59.7
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 7.6e-278 960.7 866 59.8
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 2.2e-277 959.1 856 60.0
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 2.2e-277 959.1 857 60.4
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 3.2e-276 955.3 860 59.2
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 5.4e-276 954.5 863 60.4
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 7.1e-276 954.1 859 59.1
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 2.1e-275 952.6 853 59.3
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 5.1e-274 948.0 857 59.3
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 2.1e-272 942.6 857 58.9
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 2.1e-272 942.6 855 58.9
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 6.9e-271 937.6 854 59.0
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 1.5e-270 936.4 857 59.3
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 5.8e-270 934.5 862 58.0
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 1.1e-268 930.2 858 58.9
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 2.4e-268 929.1 865 57.8
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 7.1e-268 927.5 851 58.5
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 7.1e-268 927.5 863 58.5
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 4.6e-267 924.9 851 58.2
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 4.6e-267 924.9 855 58.2
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 7.9e-267 924.1 852 58.6
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 2.3e-266 922.5 850 58.0
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 2.3e-266 922.5 860 58.5
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 3.0e-266 922.2 852 58.5
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 8.7e-266 920.6 850 58.5
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 8.7e-266 920.6 851 58.5
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 8.7e-266 920.6 854 57.8
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 6.2e-264 914.4 852 58.3
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 8.1e-264 914.1 850 58.8
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 1.2e-262 910.2 852 57.9
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 7.6e-262 907.5 846 58.0
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 4.9e-261 904.8 850 57.6
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 3.2e-260 902.1 852 57.4
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 3.2e-260 902.1 851 56.8
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 6.0e-259 897.9 870 56.4
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 1.5e-257 893.3 897 54.7
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 1.6e-256 889.8 857 57.1
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 6.9e-255 884.4 877 54.6
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 3.8e-253 878.6 868 55.1
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 4.2e-252 875.2 803 58.9
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 2.3e-250 869.4 859 55.8
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 3.4e-246 855.5 810 57.7
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 1.7e-245 853.2 856 55.6
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 9.4e-244 847.4 806 58.4
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 2.0e-238 829.7 752 60.8
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.7e-237 826.6 753 60.2
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 3.0e-226 789.3 851 51.2
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 2.8e-224 782.7 850 51.2
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.1e-223 780.8 851 49.4
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 4.1e-223 778.9 856 49.9
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 4.5e-222 775.4 861 48.4
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 6.3e-216 755.0 855 50.6
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 4.2e-212 742.3 851 49.6
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 8.0e-211 738.0 648 61.9
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 1.2e-203 714.1 682 58.1
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 9.2e-199 698.0 822 49.3
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 3.7e-184 649.4 756 49.3
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 3.3e-156 556.6 736 45.0
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.4e-154 551.2 523 57.2
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 4.6e-134 483.0 818 37.5
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 1.5e-132 478.0 852 36.4
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 3.1e-130 470.3 421 58.4
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 2.2e-120 437.6 834 36.1
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.3e-88 332.0 991 28.3
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 3.6e-86 323.9 323 57.6
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 1.5e-47 195.7 180 56.7
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 2.1e-25 122.1 91 64.8
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 7.2e-18 97.1 99 53.5
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 4.6e-17 94.4 582 21.0
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 1.9e-15 89.0 707 21.8
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 1.2e-12 79.7 49 71.4
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.7e-11 75.9 59 61.0
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.9e-11 75.1 57 63.2
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 3.8e-11 74.7 57 61.4
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 8.5e-11 73.6 86 48.8
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 1.4e-10 72.8 99 39.4
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 2.7e-09 68.6 52 59.6
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 3.7e-06 58.2 44 59.1
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 3.7e-06 58.2 62 46.8
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 4.8e-06 57.8 98 42.9


User provided reference genes

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