Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 3.9e-111 404.8 206 100.0
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.1e-76 288.9 203 70.0
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 2.3e-71 272.7 204 69.1
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.1e-68 263.8 205 67.3
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.5e-67 258.5 205 67.3
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 7.2e-65 251.1 205 66.3
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.1e-63 245.0 203 64.5
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 2.6e-59 232.6 161 75.8
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 7.9e-56 221.1 205 57.6
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.9e-55 218.8 207 57.0
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.1e-48 196.4 191 58.1
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 4.7e-48 195.3 218 50.9
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 2.3e-47 193.0 211 50.7
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.7e-47 191.4 220 48.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 4.4e-46 188.7 216 49.1
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 7.5e-46 188.0 214 47.7
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.3e-45 187.2 216 47.2
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 2.2e-45 186.4 214 48.1
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 4.8e-45 185.3 215 47.9
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 4.8e-45 185.3 219 46.6
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.1e-44 184.1 216 46.8
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 1.8e-44 183.3 214 46.7
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.0e-43 179.9 214 46.7
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 4.5e-43 178.7 220 45.9
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.0e-42 177.6 211 45.5
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.7e-42 176.8 215 47.0
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.7e-42 176.8 215 47.0
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.7e-42 176.8 209 48.3
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 2.2e-42 176.4 217 46.1
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 2.9e-42 176.0 212 46.7
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 5.0e-42 175.3 217 43.3
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 8.5e-42 174.5 215 44.7
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.1e-41 174.1 221 43.9
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 1.9e-41 173.3 214 44.9
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 5.5e-41 171.8 215 45.1
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 7.2e-41 171.4 214 43.5
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 7.2e-41 171.4 217 44.7
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 7.2e-41 171.4 215 43.7
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 9.4e-41 171.0 215 43.7
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 9.4e-41 171.0 215 45.1
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.6e-40 170.2 202 46.5
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.6e-40 170.2 214 45.3
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 2.1e-40 169.9 209 42.6
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 2.7e-40 169.5 207 42.5
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.7e-40 169.5 201 46.3
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 4.7e-40 168.7 209 45.5
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.7e-40 168.7 229 43.2
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 6.1e-40 168.3 216 45.4
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 8.0e-40 167.9 205 47.3
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.8e-39 166.8 212 44.3
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.8e-39 166.8 209 44.5
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.8e-39 166.8 214 43.9
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 5.2e-39 165.2 214 42.5
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.2e-38 164.1 216 42.6
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.2e-38 164.1 216 42.6
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.5e-38 163.7 224 42.9
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 2.0e-38 163.3 198 46.0
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 2.6e-38 162.9 200 45.0
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 3.4e-38 162.5 216 43.1
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 4.4e-38 162.2 127 64.6
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 4.4e-38 162.2 216 42.1
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 4.4e-38 162.2 216 42.1
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 4.4e-38 162.2 216 42.1
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 9.8e-38 161.0 229 42.4
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 2.8e-37 159.5 212 44.8
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 3.7e-37 159.1 208 42.8
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 4.8e-37 158.7 217 41.0
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 8.3e-37 157.9 218 41.7
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.1e-36 157.5 225 42.7
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 1.1e-36 157.5 212 45.8
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.1e-36 157.5 216 42.1
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.4e-36 157.1 207 39.6
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.4e-36 157.1 206 43.2
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 1.8e-36 156.8 207 39.6
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.8e-36 156.8 217 41.9
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 2.4e-36 156.4 216 43.1
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.4e-36 156.4 203 41.4
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 2.4e-36 156.4 216 42.1
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 3.1e-36 156.0 200 40.0
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 3.1e-36 156.0 210 41.0
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 4.1e-36 155.6 199 44.2
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 9.1e-36 154.5 207 43.5
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 9.1e-36 154.5 215 41.4
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 1.6e-35 153.7 199 43.7
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.7e-35 152.9 243 39.5
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 3.5e-35 152.5 207 41.1
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 8.6e-34 147.9 229 37.1
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.1e-33 147.5 220 40.0
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 1.5e-33 147.1 223 39.0
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.5e-33 147.1 222 37.4
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.5e-33 147.1 222 39.6
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.9e-33 146.7 215 37.7
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 7.2e-33 144.8 235 37.0
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 8.0e-32 141.4 208 38.9
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 8.0e-32 141.4 253 37.5
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.0e-31 141.0 195 41.5
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.0e-31 141.0 195 41.5
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 6.8e-31 138.3 216 38.9
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.2e-30 137.5 207 38.6
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 1.2e-30 137.5 220 40.5
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 4.4e-30 135.6 223 37.7
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 5.7e-30 135.2 191 39.3
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 4.9e-29 132.1 216 35.6
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 6.3e-29 131.7 206 37.4
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 6.3e-29 131.7 232 34.9
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.8e-28 130.2 242 37.2
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.8e-28 130.2 213 34.7
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 4.1e-28 129.0 217 35.5
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.7e-26 123.6 207 37.7
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 3.8e-26 122.5 216 37.5
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 3.8e-26 122.5 170 42.4
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 8.6e-26 121.3 235 34.9
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.3e-25 119.0 172 42.4
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 5.6e-25 118.6 181 40.3
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 5.6e-25 118.6 215 33.5
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 6.1e-24 115.2 239 35.1
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 8.9e-23 111.3 219 31.1
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 8.9e-23 111.3 219 31.1
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.4e-22 109.0 217 35.5
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 4.4e-22 109.0 138 45.7
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 5.8e-22 108.6 197 39.6
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.2e-21 106.7 204 35.8
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.7e-21 105.9 172 36.0
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 5.4e-20 102.1 137 45.3
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 7.0e-20 101.7 164 34.8
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 3.5e-19 99.4 207 28.0
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.6e-18 95.1 75 65.3
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 2.5e-17 93.2 222 26.1
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 3.3e-17 92.8 54 79.6
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 3.3e-17 92.8 54 79.6
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 3.3e-17 92.8 103 47.6
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 1.2e-16 90.9 107 50.5
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 8.0e-16 88.2 78 51.3
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.3e-15 86.7 93 48.4
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 5.2e-15 85.5 85 48.2
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 5.8e-14 82.0 80 46.2
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 8.3e-13 78.2 97 46.4
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 9.2e-12 74.7 82 41.5
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.3e-10 70.9 81 45.7
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 6.6e-10 68.6 87 37.9
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.6e-10 68.6 210 26.2
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 3.3e-09 66.2 219 25.6
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 5.6e-09 65.5 150 35.3
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 4.7e-08 62.4 77 45.5
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 2.0e-06 57.0 107 30.8


User provided reference genes

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