Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g20882 Beta vulgaris HOM05D001994 ORTHO05D001954 8.5e-51 203.4 102 100.0
EL10Ac6g14283 Beta vulgaris HOM05D001994 ORTHO05D001954 2.5e-50 201.8 102 99.0
EL10Ac8g19285 Beta vulgaris HOM05D001994 ORTHO05D001954 1.2e-49 199.5 102 98.0
EL10Ac1g00848 Beta vulgaris HOM05D001994 ORTHO05D001954 5.9e-28 127.5 68 94.1
QL04p039480 Quercus lobata HOM05D001994 ORTHO05D001954 1.9e-26 122.5 68 89.7
AUR62004176 Chenopodium quinoa HOM05D001994 ORTHO05D001954 5.5e-26 120.9 68 89.7
AUR62013675 Chenopodium quinoa HOM05D001994 ORTHO05D001954 5.5e-26 120.9 68 89.7
CANSAT56G3632 Cannabis sativa HOM05D001994 ORTHO05D001954 7.2e-26 120.6 68 88.2
MD07G1117300 Malus domestica HOM05D001994 ORTHO05D001954 7.2e-26 120.6 68 88.2
Cpa.g.sc145.5 Carica papaya HOM05D001994 ORTHO05D001954 9.5e-26 120.2 68 86.8
Haze_02658 Corylus avellana HOM05D001994 ORTHO05D001954 9.5e-26 120.2 68 86.8
Ah.05g174670 Amaranthus hybridus HOM05D001994 ORTHO05D001954 1.2e-25 119.8 68 89.7
CiPaw.13G033900 Carya illinoinensis HOM05D001994 ORTHO05D001954 1.6e-25 119.4 68 86.8
Prupe.2G140500 Prunus persica HOM05D001994 ORTHO05D001954 1.6e-25 119.4 68 86.8
Cc00_g13820 Coffea canephora HOM05D001994 ORTHO05D001954 2.1e-25 119.0 72 81.9
Hund17039 Selenicereus undatus HOM05D001994 ORTHO05D001954 2.1e-25 119.0 68 86.8
GSVIVG01027649001 Vitis vinifera HOM05D001994 ORTHO05D001954 2.1e-25 119.0 68 86.8
Lj9C567G12 Lonicera japonica HOM05D001994 ORTHO05D001954 2.8e-25 118.6 68 85.3
RcHm_v2.0_Chr1g0349411 Rosa chinensis HOM05D001994 ORTHO05D001954 2.8e-25 118.6 68 86.8
AT2G45200 Arabidopsis thaliana HOM05D001994 ORTHO05D001954 4.7e-25 117.9 68 85.3
Ciclev10021976m.g Citrus clementina HOM05D001994 ORTHO05D001954 4.7e-25 117.9 68 85.3
Eucgr.D02473 Eucalyptus grandis HOM05D001994 ORTHO05D001954 4.7e-25 117.9 68 85.3
Thecc.01G380100 Theobroma cacao HOM05D001994 ORTHO05D001954 4.7e-25 117.9 68 85.3
COL.COLO4_12513 Corchorus olitorius HOM05D001994 ORTHO05D001954 6.1e-25 117.5 66 87.9
Manes.01G268000 Manihot esculenta HOM05D001994 ORTHO05D001954 6.1e-25 117.5 68 85.3
CsaV3_4G029820 Cucumis sativus L. HOM05D001994 ORTHO05D001954 8.0e-25 117.1 68 82.4
Glyma.01G137300 Glycine max HOM05D001994 ORTHO05D001954 8.0e-25 117.1 68 85.3
Glyma.03G029700 Glycine max HOM05D001994 ORTHO05D001954 8.0e-25 117.1 68 85.3
Psat0s2427g0040 Pisum sativum HOM05D001994 ORTHO05D001954 8.0e-25 117.1 68 86.8
Dinv43683 Davidia involucrata HOM05D001994 ORTHO05D001954 1.4e-24 116.3 68 83.8
AL4G44320 Arabidopsis lyrata HOM05D001994 ORTHO05D001954 1.8e-24 115.9 68 83.8
Carub.0004s2782 Capsella rubella HOM05D001994 ORTHO05D001954 1.8e-24 115.9 68 83.8
CARHR140430 Cardamine hirsuta HOM05D001994 ORTHO05D001954 1.8e-24 115.9 69 84.1
Ca_02142_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 1.8e-24 115.9 68 85.3
Thhalv10001610m.g Eutrema salsugineum HOM05D001994 ORTHO05D001954 1.8e-24 115.9 68 83.8
Potri.014G066800 Populus trichocarpa HOM05D001994 ORTHO05D001954 1.8e-24 115.9 68 83.8
Rhsim07G0030200 Rhododendron simsii HOM05D001994 ORTHO05D001954 1.8e-24 115.9 68 85.3
TPR.G4984 Trifolium pratense HOM05D001994 ORTHO05D001954 1.8e-24 115.9 68 85.3
Cfa011190 Carpinus fangiana HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 82.4
FvH4_7g11270 Fragaria vesca HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 85.3
FAN03G0044 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 85.3
FAN06G0063 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 85.3
FAN06G0075 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 85.3
FAN10G0180 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 85.3
FAN10G3662 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 85.3
Lalb_Chr19g0127351 Lupinus albus HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 83.8
Medtr4g025850 Medicago truncatula HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 85.3
Nn1g01089 Nelumbo nucifera HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 83.8
Nitab4.5_0000859g0340 Nicotiana tabacum HOM05D001994 ORTHO05D001954 2.3e-24 115.5 68 82.4
CSS0025456 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 3.0e-24 115.2 69 85.5
ClCG04G003190 Citrullus lanatus HOM05D001994 ORTHO05D001954 3.0e-24 115.2 68 80.9
Lj3g0015727 Lotus japonicus HOM05D001994 ORTHO05D001954 3.0e-24 115.2 68 85.3
TAR629G2471 Trochodendron aralioides HOM05D001994 ORTHO05D001954 3.0e-24 115.2 68 83.8
unitig_8.g3386 Utricularia gibba HOM05D001994 ORTHO05D001954 4.0e-24 114.8 68 83.8
THA.LOC104802459 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 5.2e-24 114.4 70 81.4
TWI59G0055 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 5.2e-24 114.4 68 83.8
vmacro13430 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 5.2e-24 114.4 69 84.1
MELO3C003263.2 Cucumis melo HOM05D001994 ORTHO05D001954 6.8e-24 114.0 68 80.9
Migut.N01620 Erythranthe guttata HOM05D001994 ORTHO05D001954 6.8e-24 114.0 68 82.4
THA.LOC104817228 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 6.8e-24 114.0 68 82.4
arahy.Tifrunner.gnm1.ann1.52K6P9 Arachis hypogaea HOM05D001994 ORTHO05D001954 8.9e-24 113.6 68 83.8
arahy.Tifrunner.gnm1.ann1.N274YR Arachis hypogaea HOM05D001994 ORTHO05D001954 8.9e-24 113.6 68 83.8
Duzib268G0263 Durio zibethinus HOM05D001994 ORTHO05D001954 8.9e-24 113.6 68 82.4
Duzib268G0340 Durio zibethinus HOM05D001994 ORTHO05D001954 8.9e-24 113.6 68 82.4
Phvul.010G079401 Phaseolus vulgaris HOM05D001994 ORTHO05D001954 8.9e-24 113.6 70 80.0
VMungo0331G1813 Vigna mungo HOM05D001994 ORTHO05D001954 8.9e-24 113.6 70 81.4
CAN.G1469.3 Capsicum annuum HOM05D001994 ORTHO05D001954 1.2e-23 113.2 72 77.8
MD02G1205800 Malus domestica HOM05D001994 ORTHO05D001954 1.2e-23 113.2 68 85.3
Peaxi162Scf00013g02411 Petunia axillaris HOM05D001994 ORTHO05D001954 1.2e-23 113.2 72 77.8
Aqoxy5G03934 Aquilegia oxysepala HOM05D001994 ORTHO05D001954 1.5e-23 112.8 68 82.4
Oeu064475.1 Olea europaea HOM05D001994 ORTHO05D001954 1.5e-23 112.8 68 80.9
Aa31LG1G26750 Aethionema arabicum HOM05D001994 ORTHO05D001954 2.0e-23 112.5 70 78.6
Sp4g27250 Schrenkiella parvula HOM05D001994 ORTHO05D001954 2.0e-23 112.5 68 80.9
SpUn0031_0070 Schrenkiella parvula HOM05D001994 ORTHO05D001954 2.0e-23 112.5 68 80.9
Lj7A532G47 Lonicera japonica HOM05D001994 ORTHO05D001954 2.6e-23 112.1 71 80.3
Lj7A533G25 Lonicera japonica HOM05D001994 ORTHO05D001954 2.6e-23 112.1 71 80.3
TAR636G0026 Trochodendron aralioides HOM05D001994 ORTHO05D001954 2.6e-23 112.1 67 83.6
MSTRG.17169 Avicennia marina HOM05D001994 ORTHO05D001954 3.4e-23 111.7 67 82.1
Duzib138G1575 Durio zibethinus HOM05D001994 ORTHO05D001954 3.4e-23 111.7 68 79.4
Sabra14G0046900 Salix brachista HOM05D001994 ORTHO05D001954 3.4e-23 111.7 67 82.1
Sc02g0002710 Simmondsia chinensis HOM05D001994 ORTHO05D001954 3.4e-23 111.7 68 80.9
Gohir.A07G146500 Gossypium hirsutum HOM05D001994 ORTHO05D001954 5.7e-23 110.9 65 86.2
Gohir.D07G152600 Gossypium hirsutum HOM05D001994 ORTHO05D001954 5.7e-23 110.9 65 86.2
Gorai.001G174700 Gossypium raimondii HOM05D001994 ORTHO05D001954 5.7e-23 110.9 65 86.2
Solyc01g091020.3 Solanum lycopersicum HOM05D001994 ORTHO05D001954 5.7e-23 110.9 72 76.4
Sopen01g036750 Solanum pennellii HOM05D001994 ORTHO05D001954 5.7e-23 110.9 72 76.4
PGSC0003DMG400025968 Solanum tuberosum HOM05D001994 ORTHO05D001954 5.7e-23 110.9 72 76.4
FAN01G2352 Fragaria x ananassa HOM05D001994 ORTHO05D001954 7.5e-23 110.5 68 83.8
Duzib133G0275 Durio zibethinus HOM05D001994 ORTHO05D001954 9.8e-23 110.2 65 84.6
Gorai.007G089800 Gossypium raimondii HOM05D001994 ORTHO05D001954 9.8e-23 110.2 65 84.6
Nitab4.5_0006445g0050 Nicotiana tabacum HOM05D001994 ORTHO05D001954 9.8e-23 110.2 68 79.4
Atru.chr5.270 Acer truncatum HOM05D001994 ORTHO05D001954 1.7e-22 109.4 68 79.4
BcaB01g03282 Brassica carinata HOM05D001994 ORTHO05D001954 1.7e-22 109.4 68 79.4
CSS0003818 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 1.7e-22 109.4 68 79.4
CSS0036564 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 1.7e-22 109.4 68 79.4
Nn6g34048 Nelumbo nucifera HOM05D001994 ORTHO05D001954 1.7e-22 109.4 65 83.1
TWI14G0332 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 1.7e-22 109.4 68 80.9
ATR0568G117 Amborella trichopoda HOM05D001994 ORTHO05D001954 2.8e-22 108.6 67 79.1
MSTRG.28184 Avicennia marina HOM05D001994 ORTHO05D001954 2.8e-22 108.6 68 76.5
Lsat_1_v5_gn_4_42700 Lactuca sativa HOM05D001994 ORTHO05D001954 2.8e-22 108.6 72 73.6
HPP92_008916 Vanilla planifolia HOM05D001994 ORTHO05D001954 3.7e-22 108.2 68 79.4
HPP92_028204 Vanilla planifolia HOM05D001994 ORTHO05D001954 3.7e-22 108.2 68 79.4
CDE11G0946 Ceratophyllum demersum HOM05D001994 ORTHO05D001954 4.9e-22 107.8 67 80.6
SGA_v2.0_scaffold43G16503 Striga asiatica HOM05D001994 ORTHO05D001954 4.9e-22 107.8 68 76.5
Actinidia22752 Actinidia chinensis HOM05D001994 ORTHO05D001954 6.3e-22 107.5 67 80.6
HanXRQChr16g0520051 Helianthus annuus HOM05D001994 ORTHO05D001954 8.3e-22 107.1 72 72.2
HanXRQChr16g0520081 Helianthus annuus HOM05D001994 ORTHO05D001954 8.3e-22 107.1 72 72.2
Actinidia22807 Actinidia chinensis HOM05D001994 ORTHO05D001954 1.8e-21 105.9 66 80.3
ECA234G2411 Erigeron canadensis HOM05D001994 ORTHO05D001954 1.8e-21 105.9 65 78.5
HanXRQChr09g0245661 Helianthus annuus HOM05D001994 ORTHO05D001954 1.8e-21 105.9 72 72.2
Sabra02G0113100 Salix brachista HOM05D001994 ORTHO05D001954 1.8e-21 105.9 68 79.4
Sed0000014 Sechium edule HOM05D001994 ORTHO05D001954 1.8e-21 105.9 68 72.1
CDE09G0219 Ceratophyllum demersum HOM05D001994 ORTHO05D001954 2.4e-21 105.5 67 79.1
CiPaw.14G026700 Carya illinoinensis HOM05D001994 ORTHO05D001954 3.1e-21 105.1 65 80.0
TAR375G0883 Trochodendron aralioides HOM05D001994 ORTHO05D001954 4.1e-21 104.8 68 75.0
Lalb_Chr07g0190121 Lupinus albus HOM05D001994 ORTHO05D001954 7.0e-21 104.0 68 77.9
MSTRG.4903 Avicennia marina HOM05D001994 ORTHO05D001954 1.2e-20 103.2 66 78.8
Potri.002G145200 Populus trichocarpa HOM05D001994 ORTHO05D001954 1.2e-20 103.2 68 79.4
Ca_25721_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 1.6e-20 102.8 67 74.6
TPR.G39081 Trifolium pratense HOM05D001994 ORTHO05D001954 1.6e-20 102.8 82 67.1
Oeu055511.1 Olea europaea HOM05D001994 ORTHO05D001954 2.0e-20 102.4 66 77.3
PSO017G4197 Papaver somniferum HOM05D001994 ORTHO05D001954 4.5e-20 101.3 68 75.0
PSO170G1942 Papaver somniferum HOM05D001994 ORTHO05D001954 4.5e-20 101.3 70 74.3
PGR042G2780 Punica granatum HOM05D001994 ORTHO05D001954 5.9e-20 100.9 68 70.6
BcaC01g05150 Brassica carinata HOM05D001994 ORTHO05D001954 3.8e-19 98.2 68 75.0
A03p25100 Brassica napus HOM05D001994 ORTHO05D001954 3.8e-19 98.2 68 75.0
C03p29940 Brassica napus HOM05D001994 ORTHO05D001954 3.8e-19 98.2 68 75.0
BolC3t15341H Brassica oleracea HOM05D001994 ORTHO05D001954 3.8e-19 98.2 68 75.0
BraA03t11712Z Brassica rapa HOM05D001994 ORTHO05D001954 3.8e-19 98.2 68 75.0
PGR004G0699 Punica granatum HOM05D001994 ORTHO05D001954 3.8e-19 98.2 57 86.0
AagrBONN_evm.TU.Sc2ySwM_228.4803 Anthoceros agrestis HOM05D001994 ORTHO05D001954 1.5e-18 96.3 70 71.4
BraA04t18832Z Brassica rapa HOM05D001994 ORTHO05D001954 1.5e-18 96.3 70 74.3
A04p33700 Brassica napus HOM05D001994 ORTHO05D001954 2.5e-18 95.5 69 75.4
BolC4t28651H Brassica oleracea HOM05D001994 ORTHO05D001954 1.6e-17 92.8 66 74.2
DCAR_010129 Daucus carota HOM05D001994 ORTHO05D001954 1.6e-17 92.8 65 72.3
Mapoly0016s0161 Marchantia polymorpha HOM05D001994 ORTHO05D001954 4.7e-17 91.3 68 67.6
C04p71430 Brassica napus HOM05D001994 ORTHO05D001954 6.1e-17 90.9 69 72.5
Solyc01g150147.1 Solanum lycopersicum HOM05D001994 ORTHO05D001954 1.0e-16 90.1 56 82.1
Pp3c4_11440 Physcomitrium patens HOM05D001994 ORTHO05D001954 1.4e-16 89.7 54 79.6
MBI04_g25317_MAGBIO Magnolia biondii HOM05D001994 ORTHO05D001954 1.2e-15 86.7 74 59.5
Os02g0126800 Oryza sativa ssp. japonica HOM05D001994 ORTHO05D001954 2.0e-15 85.9 58 72.4
CBR_g20431 Chara braunii HOM05D001994 ORTHO05D001954 5.8e-15 84.3 73 57.5
Pp3c12_18190 Physcomitrium patens HOM05D001994 ORTHO05D001954 5.8e-15 84.3 72 63.9
Dinv44134 Davidia involucrata HOM05D001994 ORTHO05D001954 7.5e-15 84.0 50 84.0
ATR0090G047 Amborella trichopoda HOM05D001994 ORTHO05D001954 1.3e-14 83.2 70 60.0
SMO146G0366 Selaginella moellendorffii HOM05D001994 ORTHO05D001954 1.4e-13 79.7 73 57.5
Gohir.A11G079500 Gossypium hirsutum HOM05D001994 ORTHO05D001954 3.5e-12 75.1 51 72.5
Gohir.D11G084200 Gossypium hirsutum HOM05D001994 ORTHO05D001954 3.5e-12 75.1 60 63.3
HanXRQChr09g0245651 Helianthus annuus HOM05D001994 ORTHO05D001954 2.3e-11 72.4 50 76.0
Nn4g26396 Nelumbo nucifera HOM05D000772 ORTHO05D001954 2.1e-09 65.9 49 69.4


User provided reference genes

Program Settings