Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 7.4e-112 407.5 256 100.0
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 8.9e-57 224.6 264 53.4
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.2e-46 189.1 277 55.2
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.0e-44 184.5 265 47.2
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.0e-44 184.5 257 45.5
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.9e-41 171.8 258 46.1
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.9e-41 171.8 258 46.1
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 2.0e-40 170.2 259 54.1
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 5.8e-40 168.7 267 44.9
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 5.8e-40 168.7 264 44.3
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 9.9e-40 167.9 197 59.9
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.3e-39 167.5 259 54.1
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 6.4e-39 165.2 260 41.5
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.4e-38 164.1 256 53.9
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 2.1e-37 160.2 253 43.1
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 2.7e-37 159.8 259 53.3
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.0e-36 157.9 277 42.6
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.8e-36 157.1 260 41.5
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 3.0e-36 156.4 266 42.1
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 5.1e-36 155.6 199 45.7
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.5e-35 154.1 270 54.1
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 1.9e-35 153.7 256 47.3
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.3e-35 152.5 253 42.3
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 4.3e-35 152.5 260 40.8
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.3e-35 152.5 256 46.9
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 5.6e-35 152.1 253 52.6
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 9.6e-35 151.4 258 46.1
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 2.8e-34 149.8 255 45.9
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 4.8e-34 149.1 271 44.3
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 6.2e-34 148.7 271 44.6
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 6.2e-34 148.7 170 56.5
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.4e-33 147.5 261 41.0
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.1e-33 146.4 261 44.1
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 5.3e-33 145.6 256 49.2
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 2.0e-32 143.7 252 42.9
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 2.6e-32 143.3 118 61.9
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 5.8e-32 142.1 259 47.9
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 5.8e-32 142.1 249 39.4
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 7.6e-32 141.7 93 72.0
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 9.9e-32 141.4 83 79.5
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 1.3e-31 141.0 79 81.0
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 1.3e-31 141.0 260 44.2
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.7e-31 140.6 256 41.0
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.9e-31 139.8 254 44.9
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 3.8e-31 139.4 260 43.8
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 3.8e-31 139.4 84 79.8
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 4.9e-31 139.0 260 48.8
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.4e-31 138.7 83 78.3
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 6.4e-31 138.7 229 41.5
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 8.4e-31 138.3 257 38.5
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 8.4e-31 138.3 121 62.8
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.4e-30 137.5 122 59.0
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.9e-30 137.1 86 74.4
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 2.5e-30 136.7 92 71.7
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 3.2e-30 136.3 253 39.1
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 3.2e-30 136.3 192 43.8
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 4.2e-30 136.0 82 79.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 4.2e-30 136.0 254 42.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.5e-30 135.6 91 71.4
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 5.5e-30 135.6 260 41.5
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 7.1e-30 135.2 104 64.4
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 9.3e-30 134.8 254 49.6
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.2e-29 134.4 109 61.5
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.2e-29 134.4 260 45.0
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 1.2e-29 134.4 79 78.5
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.1e-29 133.7 197 41.6
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 2.7e-29 133.3 202 40.1
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.7e-29 133.3 172 43.6
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 2.7e-29 133.3 175 44.6
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.5e-29 132.9 253 45.1
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 3.5e-29 132.9 91 72.5
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 3.5e-29 132.9 254 38.6
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.6e-29 132.5 259 53.3
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 6.0e-29 132.1 79 78.5
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 7.9e-29 131.7 256 41.8
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.0e-28 131.3 84 73.8
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.3e-28 131.0 254 38.6
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.8e-28 130.6 114 64.9
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 2.3e-28 130.2 193 42.5
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 3.0e-28 129.8 90 71.1
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.9e-28 129.4 256 41.0
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.1e-28 129.0 252 40.5
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 5.1e-28 129.0 202 39.6
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 6.7e-28 128.6 88 69.3
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 8.7e-28 128.3 187 44.4
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 1.5e-27 127.5 115 59.1
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.9e-27 127.1 87 69.0
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.3e-27 126.3 256 44.1
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.3e-27 126.3 121 53.7
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 4.3e-27 125.9 253 37.9
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 7.4e-27 125.2 169 43.2
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 7.4e-27 125.2 84 71.4
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 7.4e-27 125.2 255 38.4
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 9.6e-27 124.8 253 38.7
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 2.1e-26 123.6 191 40.3
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 3.7e-26 122.9 198 37.9
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 4.8e-26 122.5 79 75.9
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 8.2e-26 121.7 200 39.0
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 8.2e-26 121.7 79 74.7
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.4e-25 120.9 169 41.4
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 4.0e-25 119.4 201 38.8
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 4.0e-25 119.4 181 46.4
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 4.0e-25 119.4 201 38.8
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 4.0e-25 119.4 181 46.4
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 6.9e-25 118.6 202 39.1
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 6.9e-25 118.6 116 53.4
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 6.9e-25 118.6 115 53.9
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 3.4e-24 116.3 254 36.6
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.4e-24 116.3 79 70.9
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 4.5e-24 115.9 186 39.8
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.5e-24 115.9 257 37.4
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 4.5e-24 115.9 99 54.5
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 4.5e-24 115.9 79 69.6
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 7.6e-24 115.2 106 57.5
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.0e-23 114.8 78 71.8
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-23 114.0 116 51.7
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.9e-23 113.2 79 69.6
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 3.8e-23 112.8 87 69.0
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 6.5e-23 112.1 77 68.8
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 6.5e-23 112.1 68 73.5
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 6.5e-23 112.1 106 54.7
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.4e-22 110.9 85 61.2
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.4e-22 110.9 87 58.6
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.4e-22 110.9 79 68.4
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 3.2e-22 109.8 168 39.3
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 3.2e-22 109.8 168 39.3
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 3.2e-22 109.8 170 45.9
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 7.1e-22 108.6 121 47.9
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.2e-21 107.8 253 34.0
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 2.7e-21 106.7 79 62.0
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 3.0e-20 103.2 86 59.3
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.5e-19 100.1 103 52.4
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 4.8e-18 95.9 206 34.0
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.1e-17 94.7 116 43.1
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.1e-17 94.7 116 43.1
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.4e-17 93.6 96 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 5.3e-17 92.4 81 58.0
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 5.3e-17 92.4 198 32.3
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 8.8e-12 75.1 212 37.3
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 3.4e-08 63.2 58 48.3
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 4.5e-08 62.8 117 36.8


User provided reference genes

Program Settings