Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 4.5e-76 287.7 134 100.0
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 1.7e-59 232.6 136 83.8
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 1.7e-59 232.6 136 83.8
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 5.5e-58 227.6 136 80.1
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 7.2e-58 227.3 136 80.9
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 7.2e-58 227.3 136 80.9
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 1.6e-57 226.1 136 79.4
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 1.6e-57 226.1 136 79.4
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.6e-57 226.1 136 80.9
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 2.1e-57 225.7 136 80.9
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 2.7e-57 225.3 136 80.9
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.6e-57 224.9 136 80.9
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.6e-57 224.9 136 80.9
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 3.6e-57 224.9 136 80.9
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 6.1e-57 224.2 136 80.9
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 8.0e-57 223.8 136 81.6
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 8.0e-57 223.8 136 81.6
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 8.0e-57 223.8 136 80.9
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 8.0e-57 223.8 136 80.9
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 1.0e-56 223.4 136 80.1
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 1.0e-56 223.4 136 79.4
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.0e-56 223.4 136 80.1
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.8e-56 222.6 136 79.4
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 2.3e-56 222.2 136 80.1
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-56 222.2 136 79.4
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 2.3e-56 222.2 136 79.4
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 80.1
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-56 221.9 136 79.4
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 5.2e-56 221.1 136 79.4
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 8.8e-56 220.3 136 79.4
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 2.0e-55 219.2 134 79.9
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 2.0e-55 219.2 134 79.9
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 2.0e-55 219.2 134 79.9
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 2.0e-55 219.2 137 79.6
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 2.0e-55 219.2 136 78.7
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 3.4e-55 218.4 136 78.7
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 4.4e-55 218.0 136 78.7
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.7e-54 216.1 136 75.0
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 1.7e-54 216.1 136 77.9
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 2.8e-54 215.3 136 75.0
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 4.8e-54 214.5 134 79.1
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-53 213.0 136 77.2
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 3.1e-53 211.8 136 76.5
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 5.4e-53 211.1 136 77.2
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 7.0e-53 210.7 136 76.5
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 1.2e-52 209.9 136 75.7
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 3.5e-52 208.4 136 75.0
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 4.5e-52 208.0 135 77.0
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 5.0e-51 204.5 128 78.1
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 6.5e-51 204.1 135 71.9
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.9e-50 202.6 136 74.3
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.4e-48 196.4 136 71.3
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 8.8e-48 193.7 117 82.1
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 1.2e-47 193.4 136 72.1
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 2.0e-47 192.6 136 69.9
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 5.7e-47 191.0 121 77.7
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 5.7e-47 191.0 121 77.7
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 5.7e-47 191.0 121 77.7
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 4.9e-46 188.0 133 69.2
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 8.3e-46 187.2 132 71.2
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 1.4e-45 186.4 116 78.4
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.0e-45 184.1 116 77.6
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.0e-44 182.6 136 71.3
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.8e-43 178.3 136 68.4
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 6.6e-43 177.6 125 71.2
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-41 173.3 136 68.4
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 1.4e-40 169.9 89 83.1
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.3e-40 169.1 111 75.7
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.4e-39 165.2 111 75.7
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 3.4e-39 165.2 121 71.9
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.4e-39 164.9 111 75.7
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 6.4e-38 161.0 105 77.1
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 8.3e-38 160.6 85 82.4
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 9.2e-37 157.1 108 69.4
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 4.6e-36 154.8 136 62.5
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.3e-35 153.3 102 73.5
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.9e-35 152.1 94 74.5
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 1.9e-34 149.4 101 75.2
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 7.3e-34 147.5 105 70.5
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.2e-33 146.7 112 68.8
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 1.2e-33 146.7 77 85.7
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 1.2e-33 146.7 77 85.7
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 1.2e-33 146.7 77 85.7
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.2e-33 146.7 95 78.9
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 6.2e-33 144.4 84 77.4
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 6.2e-33 144.4 84 77.4
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 6.2e-33 144.4 109 69.7
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 8.0e-33 144.1 86 77.9
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 8.0e-33 144.1 136 59.6
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 3.1e-32 142.1 89 77.5
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 4.0e-32 141.7 110 69.1
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.0e-31 139.4 78 79.5
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.0e-31 139.4 109 66.1
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.4e-31 138.7 137 54.0
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.4e-31 138.7 137 54.0
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.4e-31 138.7 137 54.0
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 7.5e-31 137.5 77 79.2
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.2e-30 136.0 88 70.5
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 6.4e-30 134.4 92 76.1
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 1.1e-29 133.7 135 59.3
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 3.2e-29 132.1 111 66.7
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.2e-29 132.1 79 77.2
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 5.4e-29 131.3 76 76.3
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 9.2e-29 130.6 132 59.1
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.0e-27 127.1 100 68.0
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.7e-27 126.3 83 79.5
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 5.0e-27 124.8 83 78.3
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 6.6e-27 124.4 83 78.3
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 6.6e-27 124.4 90 72.2
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 1.5e-26 123.2 98 65.3
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 4.3e-26 121.7 84 75.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 9.5e-26 120.6 83 75.9
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.6e-25 119.8 83 74.7
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 2.0e-23 112.8 137 51.1
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.6e-23 112.5 84 70.2
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 7.5e-23 110.9 83 69.9
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 1.7e-22 109.8 96 56.2
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.2e-22 109.4 83 68.7
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 6.4e-22 107.8 91 63.7
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 1.9e-21 106.3 76 75.0
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.6e-20 103.2 76 63.2
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 3.5e-20 102.1 68 79.4
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 9.5e-18 94.0 121 48.8
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 2.1e-17 92.8 65 75.4
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-16 90.5 64 64.1
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 8.9e-16 87.4 48 79.2
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 8.9e-16 87.4 49 75.5
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.0e-15 86.3 59 78.0
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.3e-14 83.6 57 78.9
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-14 83.2 59 74.6
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.2e-12 77.0 41 82.9
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 2.5e-10 69.3 50 76.0
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 3.3e-10 68.9 53 71.7
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 3.3e-10 68.9 39 79.5
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 3.4e-07 58.9 46 63.0
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 4.4e-07 58.5 67 38.8
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 9.9e-07 57.4 48 62.5
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.3e-06 57.0 32 84.4


User provided reference genes

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