Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g20606 Beta vulgaris HOM05D003447 ORTHO05D003967 1.1e-31 139.4 72 100.0
EL10Ac1g02349 Beta vulgaris HOM05D003447 ORTHO05D003967 6.9e-31 136.7 71 98.6
EL10Ac2g04875 Beta vulgaris HOM05D003447 ORTHO05D003967 1.3e-21 105.9 60 86.7
AUR62022923 Chenopodium quinoa HOM05D003447 ORTHO05D003967 2.9e-21 104.8 60 85.0
AUR62012283 Chenopodium quinoa HOM05D003447 ORTHO05D003967 6.5e-21 103.6 60 83.3
Hund14188 Selenicereus undatus HOM05D003447 ORTHO05D003967 2.1e-19 98.6 60 80.0
Hund15896 Selenicereus undatus HOM05D003447 ORTHO05D003967 5.7e-17 90.5 60 73.3
TWI18G0963 Tripterygium wilfordii HOM05D003447 ORTHO05D003967 1.6e-16 89.0 60 71.7
Cpa.g.sc19.146 Carica papaya HOM05D003447 ORTHO05D003967 3.7e-16 87.8 60 66.7
Gohir.D06G167900 Gossypium hirsutum HOM05D003447 ORTHO05D003967 4.8e-16 87.4 60 66.7
Thecc.10G012500 Theobroma cacao HOM05D003447 ORTHO05D003967 6.3e-16 87.0 61 65.6
THA.LOC104816537 Tarenaya hassleriana HOM05D003447 ORTHO05D003967 8.2e-16 86.7 60 68.3
TAR369G0227 Trochodendron aralioides HOM05D003447 ORTHO05D003967 1.1e-15 86.3 60 68.3
Gorai.010G195800 Gossypium raimondii HOM05D003447 ORTHO05D003967 1.4e-15 85.9 60 65.0
Sc11g0005230 Simmondsia chinensis HOM05D003447 ORTHO05D003967 1.4e-15 85.9 60 71.7
Atru.chr12.82 Acer truncatum HOM05D003447 ORTHO05D003967 1.8e-15 85.5 60 66.7
Gohir.A06G162400 Gossypium hirsutum HOM05D003447 ORTHO05D003967 1.8e-15 85.5 60 66.7
Manes.10G009900 Manihot esculenta HOM05D003447 ORTHO05D003967 1.8e-15 85.5 67 61.2
AL3G22610 Arabidopsis lyrata HOM05D003447 ORTHO05D003967 2.4e-15 85.1 60 68.3
Thhalv10020523m.g Eutrema salsugineum HOM05D003447 ORTHO05D003967 2.4e-15 85.1 60 66.7
TAR636G2202 Trochodendron aralioides HOM05D003447 ORTHO05D003967 2.4e-15 85.1 60 66.7
Aa31LG3G4050 Aethionema arabicum HOM05D003447 ORTHO05D003967 3.1e-15 84.7 60 65.0
Rhsim03G0145600 Rhododendron simsii HOM05D003447 ORTHO05D003967 3.1e-15 84.7 60 68.3
Sed0026105 Sechium edule HOM05D003447 ORTHO05D003967 3.1e-15 84.7 60 66.7
Aqoxy3G01449 Aquilegia oxysepala HOM05D003447 ORTHO05D003967 4.1e-15 84.3 60 66.7
CSS0027209 Camellia sinensis var. sinensis HOM05D003447 ORTHO05D003967 4.1e-15 84.3 60 68.3
COL.COLO4_25774 Corchorus olitorius HOM05D003447 ORTHO05D003967 4.1e-15 84.3 60 65.0
Duzib114G0409 Durio zibethinus HOM05D003447 ORTHO05D003967 4.1e-15 84.3 60 65.0
Prupe.2G254100 Prunus persica HOM05D003447 ORTHO05D003967 4.1e-15 84.3 60 61.7
Actinidia00666 Actinidia chinensis HOM05D003447 ORTHO05D003967 5.3e-15 84.0 60 65.0
THA.LOC104826843 Tarenaya hassleriana HOM05D003447 ORTHO05D003967 5.3e-15 84.0 60 66.7
CSS0030356 Camellia sinensis var. sinensis HOM05D003447 ORTHO05D003967 6.9e-15 83.6 60 66.7
Cfa001291 Carpinus fangiana HOM05D003447 ORTHO05D003967 6.9e-15 83.6 60 65.0
Haze_17258 Corylus avellana HOM05D003447 ORTHO05D003967 6.9e-15 83.6 60 65.0
BcaB04g18621 Brassica carinata HOM05D003447 ORTHO05D003967 9.0e-15 83.2 60 66.7
BcaC01g04146 Brassica carinata HOM05D003447 ORTHO05D003967 9.0e-15 83.2 60 66.7
A03p36880 Brassica napus HOM05D003447 ORTHO05D003967 9.0e-15 83.2 60 66.7
C03p44680 Brassica napus HOM05D003447 ORTHO05D003967 9.0e-15 83.2 60 66.7
BolC3t16730H Brassica oleracea HOM05D003447 ORTHO05D003967 9.0e-15 83.2 60 66.7
BraA03t12851Z Brassica rapa HOM05D003447 ORTHO05D003967 9.0e-15 83.2 60 66.7
Ca_15145_v3 Cicer arietinum L. HOM05D003447 ORTHO05D003967 9.0e-15 83.2 60 63.3
Oeu059714.1 Olea europaea HOM05D003447 ORTHO05D003967 9.0e-15 83.2 60 66.7
Aa31LG11G6600 Aethionema arabicum HOM05D003447 ORTHO05D003967 1.2e-14 82.8 60 61.7
BcaNung07345 Brassica carinata HOM05D003447 ORTHO05D003967 1.2e-14 82.8 60 63.3
A05p38190 Brassica napus HOM05D003447 ORTHO05D003967 1.2e-14 82.8 67 59.7
BraA05t22612Z Brassica rapa HOM05D003447 ORTHO05D003967 1.2e-14 82.8 67 59.7
Dinv21759 Davidia involucrata HOM05D003447 ORTHO05D003967 1.2e-14 82.8 60 65.0
Glyma.18G025400 Glycine max HOM05D003447 ORTHO05D003967 1.2e-14 82.8 60 63.3
TPR.G18927 Trifolium pratense HOM05D003447 ORTHO05D003967 1.2e-14 82.8 60 65.0
VMungo1383G3146 Vigna mungo HOM05D003447 ORTHO05D003967 1.2e-14 82.8 60 63.3
Aqoxy6G00293 Aquilegia oxysepala HOM05D003447 ORTHO05D003967 1.5e-14 82.4 60 65.0
AT5G05520 Arabidopsis thaliana HOM05D003447 ORTHO05D003967 1.5e-14 82.4 60 61.7
BcaC05g29399 Brassica carinata HOM05D003447 ORTHO05D003967 1.5e-14 82.4 67 59.7
C05p57000 Brassica napus HOM05D003447 ORTHO05D003967 1.5e-14 82.4 67 59.7
BolC5t34363H Brassica oleracea HOM05D003447 ORTHO05D003967 1.5e-14 82.4 67 59.7
Glyma.02G264000 Glycine max HOM05D003447 ORTHO05D003967 1.5e-14 82.4 60 61.7
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 1.5e-14 82.4 60 65.0
Lj6g0014357 Lotus japonicus HOM05D003447 ORTHO05D003967 1.5e-14 82.4 60 65.0
Manes.07G132600 Manihot esculenta HOM05D003447 ORTHO05D003967 1.5e-14 82.4 60 65.0
Actinidia00965 Actinidia chinensis HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 63.3
arahy.Tifrunner.gnm1.ann1.4HSV53 Arachis hypogaea HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 63.3
ClCG08G007680 Citrullus lanatus HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 66.7
CsaV3_6G036670 Cucumis sativus L. HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 66.7
Glyma.11G231800 Glycine max HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 61.7
Lalb_Chr04g0250461 Lupinus albus HOM05D003447 ORTHO05D003967 2.0e-14 82.0 61 60.7
Oeu011113.1 Olea europaea HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 66.7
SHI28826 Sapria himalayana HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 66.7
Sp3g09400 Schrenkiella parvula HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 65.0
Hund09485 Selenicereus undatus HOM05D003447 ORTHO05D003967 2.0e-14 82.0 60 66.7
AL1G36980 Arabidopsis lyrata HOM05D003447 ORTHO05D003967 2.6e-14 81.6 58 65.5
AT3G11070 Arabidopsis thaliana HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 65.0
arahy.Tifrunner.gnm1.ann1.G3A1I6 Arachis hypogaea HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 63.3
arahy.Tifrunner.gnm1.ann1.SQTL6G Arachis hypogaea HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 63.3
BcaC06g32264 Brassica carinata HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 60.0
A10p30750 Brassica napus HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 60.0
C09p71240 Brassica napus HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 60.0
BolC9t59885H Brassica oleracea HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 60.0
BraA10t45116Z Brassica rapa HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 60.0
MELO3C019821.2 Cucumis melo HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 66.7
Thhalv10013229m.g Eutrema salsugineum HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 60.0
Medtr3g071450 Medicago truncatula HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 65.0
Potri.010G185600 Populus trichocarpa HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 63.3
Sabra10G0142800 Salix brachista HOM05D003447 ORTHO05D003967 2.6e-14 81.6 59 64.4
TPR.G38453 Trifolium pratense HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 65.0
vmacro06955 Vaccinium macrocarpon HOM05D003447 ORTHO05D003967 2.6e-14 81.6 60 63.3
AL6G15410 Arabidopsis lyrata HOM05D003447 ORTHO05D003967 3.4e-14 81.3 60 60.0
CARHR207750 Cardamine hirsuta HOM05D003447 ORTHO05D003967 3.4e-14 81.3 60 61.7
Dinv10598 Davidia involucrata HOM05D003447 ORTHO05D003967 3.4e-14 81.3 60 65.0
Lalb_Chr11g0075031 Lupinus albus HOM05D003447 ORTHO05D003967 3.4e-14 81.3 59 62.7
MD01G1156600 Malus domestica HOM05D003447 ORTHO05D003967 3.4e-14 81.3 60 60.0
Nn2g10952 Nelumbo nucifera HOM05D003447 ORTHO05D003967 3.4e-14 81.3 60 63.3
QL08p063564 Quercus lobata HOM05D003447 ORTHO05D003967 3.4e-14 81.3 60 61.7
Sed0016246 Sechium edule HOM05D003447 ORTHO05D003967 3.4e-14 81.3 60 66.7
GSVIVG01032775001 Vitis vinifera HOM05D003447 ORTHO05D003967 3.4e-14 81.3 60 63.3
BcaC05g29397 Brassica carinata HOM05D003447 ORTHO05D003967 4.5e-14 80.9 60 61.7
CiPaw.02G194700 Carya illinoinensis HOM05D003447 ORTHO05D003967 4.5e-14 80.9 60 63.3
Cc02_g06150 Coffea canephora HOM05D003447 ORTHO05D003967 4.5e-14 80.9 60 65.0
PSO017G1559 Papaver somniferum HOM05D003447 ORTHO05D003967 4.5e-14 80.9 60 61.7
Phvul.001G245000 Phaseolus vulgaris HOM05D003447 ORTHO05D003967 4.5e-14 80.9 60 61.7
Psat5g130400 Pisum sativum HOM05D003447 ORTHO05D003967 4.5e-14 80.9 60 63.3
vmacro10022 Vaccinium macrocarpon HOM05D003447 ORTHO05D003967 4.5e-14 80.9 60 63.3
VMungo0647G1501 Vigna mungo HOM05D003447 ORTHO05D003967 4.5e-14 80.9 60 60.0
Phvul.008G222000 Phaseolus vulgaris HOM05D003447 ORTHO05D003967 5.9e-14 80.5 60 60.0
RcHm_v2.0_Chr1g0370771 Rosa chinensis HOM05D003447 ORTHO05D003967 5.9e-14 80.5 60 61.7
BcaC06g32265 Brassica carinata HOM05D003447 ORTHO05D003967 7.7e-14 80.1 60 58.3
ECA233G5125 Erigeron canadensis HOM05D003447 ORTHO05D000131 7.7e-14 80.1 60 63.3
Carub.0006s0442 Capsella rubella HOM05D003447 ORTHO05D003967 1.0e-13 79.7 59 61.0
DCAR_011834 Daucus carota HOM05D003447 ORTHO05D003967 1.0e-13 79.7 59 62.7
MBI15_g21767_MAGBIO Magnolia biondii HOM05D003447 ORTHO05D003967 1.0e-13 79.7 60 60.0
MD07G1225300 Malus domestica HOM05D003447 ORTHO05D003967 1.0e-13 79.7 60 58.3
PSO349G0167 Papaver somniferum HOM05D003447 ORTHO05D003967 1.0e-13 79.7 60 60.0
Actinidia33913 Actinidia chinensis HOM05D003447 ORTHO05D003967 1.3e-13 79.3 59 62.7
Carub.0003s1036 Capsella rubella HOM05D003447 ORTHO05D003967 1.3e-13 79.3 60 63.3
Ciclev10031211m.g Citrus clementina HOM05D003447 ORTHO05D003967 1.3e-13 79.3 59 64.4
Hma1.2p1_0523F.1_g172025 Hydrangea macrophylla HOM05D003447 ORTHO05D003967 1.3e-13 79.3 60 63.3
Hma1.2p1_3227F.1_g334210 Hydrangea macrophylla HOM05D003447 ORTHO05D003967 1.3e-13 79.3 60 63.3
Lalb_Chr08g0231571 Lupinus albus HOM05D003447 ORTHO05D003967 1.3e-13 79.3 60 61.7
Peaxi162Scf00284g00618 Petunia axillaris HOM05D003447 ORTHO05D003967 1.3e-13 79.3 59 61.0
Sp6g37330 Schrenkiella parvula HOM05D003447 ORTHO05D003967 1.3e-13 79.3 60 58.3
FvH4_7g24890 Fragaria vesca HOM05D003447 ORTHO05D003967 1.7e-13 79.0 60 63.3
FAN01G0548 Fragaria x ananassa HOM05D003447 ORTHO05D003967 1.7e-13 79.0 60 63.3
FAN06G2060 Fragaria x ananassa HOM05D003447 ORTHO05D003967 1.7e-13 79.0 60 63.3
Lsat_1_v5_gn_8_12801 Lactuca sativa HOM05D003447 ORTHO05D003967 1.7e-13 79.0 60 61.7
Potri.008G071800 Populus trichocarpa HOM05D003447 ORTHO05D003967 1.7e-13 79.0 60 63.3
Rhsim09G0179400 Rhododendron simsii HOM05D003447 ORTHO05D003967 1.7e-13 79.0 60 61.7
Sabra08G0053100 Salix brachista HOM05D003447 ORTHO05D003967 1.7e-13 79.0 60 61.7
FAN03G3165 Fragaria x ananassa HOM05D003447 ORTHO05D003967 2.2e-13 78.6 60 63.3
Solyc04g079270.4 Solanum lycopersicum HOM05D003447 ORTHO05D003967 2.2e-13 78.6 67 55.2
Sopen04g032860 Solanum pennellii HOM05D003447 ORTHO05D003967 2.2e-13 78.6 67 55.2
Actinidia29712 Actinidia chinensis HOM05D003447 ORTHO05D003967 2.9e-13 78.2 59 62.7
Ca_05980_v3 Cicer arietinum L. HOM05D003447 ORTHO05D003967 2.9e-13 78.2 60 60.0
Nitab4.5_0000068g0540 Nicotiana tabacum HOM05D003447 ORTHO05D003967 2.9e-13 78.2 59 59.3
SGA_v2.0_scaffold60G20972 Striga asiatica HOM05D003447 ORTHO05D003967 2.9e-13 78.2 60 61.7
Hma1.2p1_0292F.1_g115500 Hydrangea macrophylla HOM05D003447 ORTHO05D003967 3.8e-13 77.8 60 61.7
Lsat_1_v5_gn_2_124241 Lactuca sativa HOM05D003447 ORTHO05D003967 3.8e-13 77.8 60 63.3
Lalb_Chr23g0277031 Lupinus albus HOM05D003447 ORTHO05D003967 3.8e-13 77.8 59 61.0
Psat2g030840 Pisum sativum HOM05D003447 ORTHO05D003967 3.8e-13 77.8 60 63.3
CAN.G371.42 Capsicum annuum HOM05D003447 ORTHO05D003967 5.0e-13 77.4 59 59.3
Migut.F00656 Erythranthe guttata HOM05D003447 ORTHO05D003967 5.0e-13 77.4 61 59.0
HanXRQChr15g0468181 Helianthus annuus HOM05D003447 ORTHO05D003967 5.0e-13 77.4 60 60.0
SEGI_19345 Sequoiadendron giganteum HOM05D003447 ORTHO05D003967 5.0e-13 77.4 59 54.2
PGSC0003DMG400008029 Solanum tuberosum HOM05D003447 ORTHO05D003967 5.0e-13 77.4 67 53.7
PGR044G2674 Punica granatum HOM05D003447 ORTHO05D003967 6.5e-13 77.0 60 61.7
CANSAT56G1623 Cannabis sativa HOM05D003447 ORTHO05D003967 8.5e-13 76.6 59 57.6
FAN10G0447 Fragaria x ananassa HOM05D003447 ORTHO05D003967 8.5e-13 76.6 60 61.7
Medtr5g083050 Medicago truncatula HOM05D003447 ORTHO05D003967 8.5e-13 76.6 60 60.0
CARHR085650 Cardamine hirsuta HOM05D003447 ORTHO05D003967 1.1e-12 76.3 60 60.0
Eucgr.J00180 Eucalyptus grandis HOM05D003447 ORTHO05D003967 1.1e-12 76.3 60 56.7
MSTRG.8935 Avicennia marina HOM05D003447 ORTHO05D003967 1.4e-12 75.9 60 60.0
Oeu051627.1 Olea europaea HOM05D003447 ORTHO05D003967 1.4e-12 75.9 60 58.3
ATR0174G024 Amborella trichopoda HOM05D003447 ORTHO05D003967 1.9e-12 75.5 59 57.6
MSTRG.27311 Avicennia marina HOM05D003447 ORTHO05D003967 1.9e-12 75.5 60 60.0
Duzib268G1065 Durio zibethinus HOM05D003447 ORTHO05D003967 1.9e-12 75.5 60 60.0
Glyma.14G057500 Glycine max HOM05D003447 ORTHO05D003967 1.9e-12 75.5 60 56.7
Nitab4.5_0002212g0010 Nicotiana tabacum HOM05D003447 ORTHO05D003967 2.5e-12 75.1 59 57.6
AagrBONN_evm.TU.Sc2ySwM_344.5535 Anthoceros agrestis HOM05D003447 ORTHO05D003967 3.2e-12 74.7 59 57.6
SalBow3G2537 Salvia bowleyana HOM05D003447 ORTHO05D003967 3.2e-12 74.7 60 58.3
Lj8C63G9 Lonicera japonica HOM05D003447 ORTHO05D003967 5.5e-12 73.9 60 58.3
PSO339G5029 Papaver somniferum HOM05D003447 ORTHO05D003967 7.2e-12 73.6 60 58.3
PSO801G0312 Papaver somniferum HOM05D003447 ORTHO05D003967 7.2e-12 73.6 60 58.3
CDE07G0185 Ceratophyllum demersum HOM05D003447 ORTHO05D003967 9.4e-12 73.2 61 55.7
Pp3c24_2700 Physcomitrium patens HOM05D003447 ORTHO05D003967 1.6e-11 72.4 59 57.6
SGA_v2.0_scaffold44G16666 Striga asiatica HOM05D003447 ORTHO05D003967 1.6e-11 72.4 69 52.2
COL.COLO4_09432 Corchorus olitorius HOM05D003447 ORTHO05D003967 2.1e-11 72.0 59 59.3
ECA238G0968 Erigeron canadensis HOM05D003447 ORTHO05D003967 2.1e-11 72.0 58 56.9
Gohir.D01G053000 Gossypium hirsutum HOM05D003447 ORTHO05D003967 2.1e-11 72.0 60 61.7
Gorai.002G072800 Gossypium raimondii HOM05D003447 ORTHO05D003967 2.1e-11 72.0 60 61.7
Os05g0470800 Oryza sativa ssp. japonica HOM05D003447 ORTHO05D003967 2.1e-11 72.0 54 59.3
unitig_8.g3812 Utricularia gibba HOM05D003447 ORTHO05D003967 2.1e-11 72.0 60 55.0
CDE04G2434 Ceratophyllum demersum HOM05D003447 ORTHO05D003967 2.7e-11 71.6 60 53.3
Mapoly0004s0190 Marchantia polymorpha HOM05D003447 ORTHO05D003967 2.7e-11 71.6 59 52.5
Thecc.07G077200 Theobroma cacao HOM05D003447 ORTHO05D003967 2.7e-11 71.6 60 55.0
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 3.6e-11 71.2 60 55.0
Gohir.A01G065600 Gossypium hirsutum HOM05D003447 ORTHO05D003967 1.0e-10 69.7 60 58.3
SMO367G0726 Selaginella moellendorffii HOM05D003447 ORTHO05D003967 1.0e-10 69.7 59 50.8
Zm00001eb194980 Zea mays HOM05D003447 ORTHO05D003967 1.4e-10 69.3 57 50.9
Zm00001eb351830 Zea mays HOM05D003447 ORTHO05D003967 1.4e-10 69.3 62 51.6
Pp3c23_13400 Physcomitrium patens HOM05D003447 ORTHO05D003967 3.9e-10 67.8 59 54.2
Zm00001eb404840 Zea mays HOM05D003447 ORTHO05D003967 3.9e-10 67.8 59 49.2
Zm00001eb368460 Zea mays HOM05D003447 ORTHO05D003967 5.1e-10 67.4 54 55.6
Os11g0106200 Oryza sativa ssp. japonica HOM05D003447 ORTHO05D003967 8.8e-10 66.6 59 49.2
Os12g0105700 Oryza sativa ssp. japonica HOM05D003447 ORTHO05D003967 8.8e-10 66.6 59 49.2
DCAR_024813 Daucus carota HOM05D003447 ORTHO05D003967 1.5e-09 65.9 59 52.5
Zm00001eb135010 Zea mays HOM05D003447 ORTHO05D003967 2.0e-09 65.5 59 45.8
CBR_g20300 Chara braunii HOM05D003447 ORTHO05D003967 1.1e-07 59.7 56 44.6
unitig_0.g248 Utricularia gibba HOM05D003447 ORTHO05D003967 1.5e-06 55.8 68 36.8
MCO09G860 Micromonas commoda HOM05D003447 ORTHO05D003967 5.9e-06 53.9 57 43.9


User provided reference genes

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