Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 2.8e-214 748.8 535 100.0
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 3.9e-139 499.2 578 61.1
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.3e-138 495.7 535 66.9
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 7.4e-130 468.4 548 69.0
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 5.3e-120 435.6 477 69.0
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.0e-118 431.4 544 61.9
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.9e-118 429.9 542 61.4
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 8.5e-118 428.3 552 63.6
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.2e-116 424.5 544 61.4
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 4.7e-116 422.5 544 59.6
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.0e-115 421.4 546 60.3
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.2e-114 417.9 548 66.1
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 2.0e-114 417.2 553 58.2
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.7e-113 414.1 548 61.9
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.8e-113 413.3 543 59.5
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 2.8e-113 413.3 555 64.0
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.8e-112 410.6 547 62.2
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.3e-110 404.4 542 59.0
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 2.9e-110 403.3 559 60.5
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 3.8e-110 402.9 549 60.8
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 6.5e-110 402.1 549 61.2
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 8.5e-110 401.7 540 58.5
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.1e-109 401.4 546 67.0
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.1e-109 401.4 551 59.5
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.5e-109 401.0 551 60.1
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.5e-109 400.2 551 60.1
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 5.5e-109 399.1 544 59.4
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.7e-108 396.0 545 57.6
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 4.7e-108 396.0 546 57.9
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.4e-107 394.4 544 56.2
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.4e-107 394.4 587 58.8
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.8e-107 394.0 547 62.7
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.3e-107 393.7 549 60.7
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.0e-107 393.3 544 59.2
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 5.2e-107 392.5 542 64.9
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 4.4e-106 389.4 549 57.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 7.5e-106 388.7 545 62.4
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 9.8e-106 388.3 542 58.9
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 9.8e-106 388.3 562 56.0
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 9.8e-106 388.3 543 61.7
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.3e-105 387.9 546 59.2
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.3e-105 387.9 536 59.7
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 4.8e-105 386.0 545 54.7
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 6.3e-105 385.6 548 60.2
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.3e-105 385.2 541 57.7
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.4e-104 383.6 562 59.1
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 2.4e-104 383.6 540 57.8
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 5.4e-104 382.5 540 61.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 7.0e-104 382.1 546 60.1
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.6e-103 380.9 538 66.4
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.6e-103 380.9 546 58.8
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 5.9e-103 379.0 544 65.8
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.3e-102 377.1 561 57.0
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.9e-102 376.7 552 56.7
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 2.9e-102 376.7 554 57.9
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 3.8e-102 376.3 561 56.5
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.1e-101 374.8 552 59.4
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 5.5e-101 372.5 541 57.1
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 9.5e-101 371.7 540 55.6
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-100 371.3 556 55.8
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.6e-100 370.9 552 59.8
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.1e-100 370.5 541 57.1
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 4.7e-100 369.4 543 63.0
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 8.0e-100 368.6 553 60.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.8e-99 367.5 567 59.6
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.8e-99 367.5 545 58.7
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 6.8e-99 365.5 553 59.7
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 5.7e-98 362.5 544 55.1
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 7.5e-98 362.1 565 61.2
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.3e-97 361.3 542 58.1
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 3.7e-97 359.8 544 59.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 6.3e-97 359.0 548 61.5
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 7.0e-96 355.5 569 56.8
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.6e-95 354.4 546 57.7
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.3e-94 351.3 551 57.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-93 347.4 550 58.0
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 5.6e-93 345.9 548 57.1
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 9.5e-93 345.1 545 56.5
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.6e-92 344.4 547 54.7
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 3.6e-92 343.2 565 58.4
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.8e-91 340.9 542 59.4
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 4.0e-91 339.7 524 56.3
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 4.4e-90 336.3 544 57.5
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 5.8e-90 335.9 546 59.2
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 2.9e-89 333.6 548 56.2
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.9e-89 332.8 567 52.2
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.4e-89 332.4 551 56.4
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.2e-87 328.2 557 51.0
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.3e-85 319.7 551 54.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.0e-83 313.2 549 56.5
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.3e-81 308.1 548 56.4
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 8.3e-81 305.4 599 51.8
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.4e-80 304.7 545 57.1
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 9.2e-80 302.0 561 50.1
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 2.7e-79 300.4 539 61.4
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.0e-78 298.5 553 52.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 1.5e-77 294.7 547 53.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.3e-75 287.3 459 56.2
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 3.1e-75 287.0 550 55.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.6e-74 283.9 553 48.5
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 3.4e-74 283.5 545 51.2
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 4.4e-74 283.1 580 47.8
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 5.8e-74 282.7 547 51.6
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 3.7e-73 280.0 556 51.4
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.9e-72 277.7 559 49.9
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-72 277.7 202 78.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 3.2e-72 276.9 556 50.5
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.1e-71 274.2 212 75.0
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.7e-71 273.9 545 48.1
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 3.5e-71 273.5 406 56.7
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.3e-70 271.6 569 50.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.3e-70 271.6 556 47.3
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 3.0e-70 270.4 201 77.6
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.9e-69 267.7 165 84.8
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.2e-68 265.0 218 69.7
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 3.6e-68 263.5 580 45.9
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.4e-67 261.5 463 52.3
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 2.6e-66 257.3 155 86.5
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.1e-59 235.3 498 45.4
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 4.4e-58 229.9 185 67.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-52 211.8 488 50.4
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.8e-52 210.7 160 73.1
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.4e-43 181.8 152 74.3
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 9.0e-43 179.1 534 35.6
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 2.6e-42 177.6 433 45.3
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.0e-38 165.6 398 45.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.0e-33 149.1 209 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.4e-27 128.6 516 42.1
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.6e-26 124.4 122 65.6
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.7e-26 122.9 74 83.8
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.0e-25 122.5 198 53.0
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.3e-25 122.1 109 68.8
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.9e-25 120.9 108 63.9
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 8.5e-25 119.4 104 66.3
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 1.4e-24 118.6 81 70.4
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.2e-24 117.5 142 58.5
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 2.3e-22 111.3 109 63.3
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.3e-20 105.5 169 43.2
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.7e-17 95.1 64 76.6
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 5.5e-16 90.1 103 56.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.2e-16 89.7 103 53.4
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.0e-14 84.3 115 58.3
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 3.7e-12 77.4 58 75.9
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 8.2e-12 76.3 46 84.8
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.4e-11 74.7 86 52.3
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 7.2e-08 63.2 158 33.5
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.1e-07 61.6 73 56.2
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.1e-07 61.6 73 56.2
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.0e-06 59.3 114 61.4


User provided reference genes

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