Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 0.0e+00 1249.6 644 100.0
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.2e-259 899.8 600 77.5
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 2.8e-256 888.6 600 76.3
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 9.1e-175 617.8 657 52.2
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 2.7e-174 616.3 646 53.3
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 4.5e-174 615.5 609 55.0
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 3.6e-171 605.9 603 53.9
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.8e-170 603.6 583 56.6
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 3.1e-167 592.8 608 51.3
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.2e-166 590.9 657 50.5
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 1.0e-165 587.8 644 50.0
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 2.5e-164 583.2 657 48.9
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 3.3e-164 582.8 605 52.4
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 2.1e-163 580.1 652 49.5
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 1.0e-162 577.8 606 51.3
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 1.8e-162 577.0 661 48.0
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 2.3e-162 576.6 643 49.1
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 8.9e-162 574.7 637 51.3
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 2.2e-160 570.1 627 50.1
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 3.7e-160 569.3 662 47.6
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 4.9e-160 568.9 661 50.1
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 4.1e-159 565.8 660 46.8
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 1.6e-158 563.9 649 48.8
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 5.9e-158 562.0 656 48.8
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 5.9e-158 562.0 630 49.4
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 3.8e-157 559.3 618 49.8
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 6.6e-157 558.5 657 50.5
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 1.6e-155 553.9 643 47.6
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 2.1e-155 553.5 608 49.3
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 8.0e-155 551.6 611 49.8
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 1.2e-153 547.7 592 50.8
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 1.5e-153 547.4 632 47.3
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 2.0e-153 547.0 637 48.2
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 2.0e-153 547.0 591 49.6
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 5.8e-153 545.4 636 47.5
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 9.8e-153 544.7 641 46.6
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 2.2e-152 543.5 653 47.2
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 3.7e-152 542.7 638 47.3
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 4.9e-152 542.3 641 46.5
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 4.9e-152 542.3 642 47.4
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 7.0e-151 538.5 641 46.3
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 7.0e-151 538.5 537 59.6
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 9.2e-151 538.1 605 47.8
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 2.0e-150 537.0 641 46.5
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 4.6e-150 535.8 639 47.9
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 4.6e-150 535.8 655 47.9
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 6.0e-150 535.4 604 50.3
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 1.0e-149 534.6 625 46.7
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.7e-149 533.9 670 47.8
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 1.7e-149 533.9 634 48.4
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 5.0e-149 532.3 609 46.8
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 2.5e-148 530.0 612 47.5
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 7.3e-148 528.5 642 47.0
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 9.5e-148 528.1 601 48.9
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 1.2e-147 527.7 606 46.2
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 1.6e-147 527.3 648 47.4
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 2.3e-146 523.5 700 43.3
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 3.1e-146 523.1 612 46.9
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 6.8e-146 521.9 619 48.3
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.2e-145 521.2 646 46.3
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 2.6e-145 520.0 644 46.4
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 3.4e-145 519.6 610 49.0
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.8e-145 518.8 650 46.5
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 3.7e-144 516.2 644 46.9
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 8.3e-144 515.0 638 46.7
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 1.2e-142 511.1 644 46.3
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 4.6e-142 509.2 632 44.9
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 8.6e-141 505.0 647 45.0
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 1.5e-140 504.2 647 45.1
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 3.3e-140 503.1 631 45.5
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 1.4e-138 497.7 709 42.9
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.5e-137 494.2 645 45.9
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 2.2e-136 490.3 681 44.2
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 3.7e-136 489.6 609 44.7
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 5.4e-135 485.7 573 46.9
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 5.4e-135 485.7 709 41.9
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 6.8e-130 468.8 603 43.4
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 1.3e-128 464.5 482 53.1
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 7.8e-126 455.3 638 42.2
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.9e-124 450.7 596 45.8
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 1.8e-122 444.1 603 42.5
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 4.9e-120 436.0 600 43.0
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 4.3e-116 422.9 458 53.7
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 3.1e-114 416.8 433 50.6
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 4.0e-114 416.4 489 47.6
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 3.8e-112 409.8 634 41.5
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 1.9e-111 407.5 488 48.8
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 9.3e-111 405.2 436 49.1
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 2.7e-110 403.7 641 40.2
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 2.1e-107 394.0 471 45.6
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 1.9e-103 380.9 431 47.8
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 9.3e-103 378.6 432 48.1
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 9.3e-103 378.6 534 42.3
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 4.8e-99 366.3 441 48.8
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 1.8e-98 364.4 603 38.6
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 6.9e-98 362.5 423 48.9
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 5.8e-97 359.4 430 48.8
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 1.0e-93 348.6 429 45.9
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 1.4e-90 338.2 646 36.8
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 5.3e-90 336.3 608 36.3
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.2e-87 326.6 647 36.3
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 4.4e-60 236.9 349 43.3
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 3.7e-51 207.2 618 27.0
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 3.0e-45 187.6 263 44.1
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 5.2e-45 186.8 216 46.3
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 5.9e-41 173.3 285 38.2
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 1.0e-40 172.6 636 27.5
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 3.9e-40 170.6 204 45.6
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 2.2e-35 154.8 219 37.9
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 6.2e-30 136.7 156 44.2
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.4e-29 135.6 303 33.0
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.7e-24 118.6 243 32.1
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 7.6e-20 103.2 132 47.0
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 6.6e-16 90.1 359 27.0
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 4.7e-14 84.0 93 50.5
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 2.4e-13 81.6 67 62.7
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 4.4e-12 77.4 172 34.3
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.2e-11 75.1 77 50.6
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 4.6e-09 67.4 95 44.2
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 1.9e-07 62.0 49 59.2


User provided reference genes

Program Settings