Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 4.2e-150 534.6 269 100.0
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 6.1e-32 142.1 337 39.5
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.2e-30 137.9 214 42.5
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 2.2e-29 133.7 255 38.8
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 2.2e-29 133.7 255 38.8
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.4e-28 131.0 152 52.0
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 5.9e-27 125.6 200 42.5
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 2.5e-25 120.2 210 40.0
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 4.3e-25 119.4 251 35.9
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 4.3e-25 119.4 210 41.0
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 2.1e-24 117.1 196 37.8
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 2.1e-24 117.1 230 37.8
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 4.7e-24 115.9 256 38.3
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 6.1e-24 115.5 264 36.7
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 6.1e-24 115.5 268 35.8
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 6.1e-24 115.5 189 40.2
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.0e-23 114.8 308 34.1
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.4e-23 114.4 281 34.9
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 1.8e-23 114.0 276 35.1
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.8e-23 114.0 165 44.2
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 4.0e-23 112.8 214 39.7
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 5.2e-23 112.5 282 33.7
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 6.8e-23 112.1 289 32.5
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 1.2e-22 111.3 233 37.8
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 4.4e-22 109.4 202 38.6
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 1.3e-21 107.8 197 40.6
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 2.2e-21 107.1 199 38.2
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 2.2e-21 107.1 270 36.3
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 2.2e-21 107.1 267 33.3
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 2.2e-21 107.1 201 37.8
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.2e-21 107.1 179 41.9
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 2.9e-21 106.7 202 38.6
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.9e-21 106.7 269 32.3
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 4.9e-21 105.9 304 31.6
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 6.4e-21 105.5 217 37.3
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 6.4e-21 105.5 202 38.6
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 8.3e-21 105.1 111 51.4
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 2.4e-20 103.6 145 42.8
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.4e-20 103.6 248 34.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 3.2e-20 103.2 134 45.5
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.2e-20 103.2 157 42.7
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 3.2e-20 103.2 302 33.4
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 4.1e-20 102.8 274 36.5
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 4.1e-20 102.8 279 34.1
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 5.4e-20 102.4 126 46.8
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.4e-20 102.4 305 32.1
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.2e-19 101.3 184 41.8
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 2.0e-19 100.5 270 33.3
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 5.9e-19 99.0 242 34.7
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 5.9e-19 99.0 262 34.4
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.0e-18 98.2 269 34.6
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 1.0e-18 98.2 296 33.4
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.7e-18 97.4 275 32.0
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 1.7e-18 97.4 300 32.3
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 3.9e-18 96.3 251 35.5
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 5.0e-18 95.9 209 35.4
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 1.1e-17 94.7 242 34.3
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.1e-17 94.7 316 32.0
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 1.1e-17 94.7 268 32.5
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.9e-17 94.0 287 33.8
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 3.3e-17 93.2 299 30.8
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 1.2e-16 91.3 94 53.2
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.2e-16 91.3 176 38.1
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.2e-16 91.3 305 29.2
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.6e-16 90.9 101 52.5
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 2.8e-16 90.1 101 50.5
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.6e-16 89.7 291 32.6
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 3.6e-16 89.7 101 50.5
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 8.0e-16 88.6 318 30.5
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 8.0e-16 88.6 288 31.6
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 4.0e-15 86.3 246 33.7
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 5.2e-15 85.9 260 31.5
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 5.2e-15 85.9 253 32.8
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 8.9e-15 85.1 64 67.2
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.2e-14 84.7 305 30.5
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.2e-14 84.7 208 35.6
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 2.6e-14 83.6 236 33.5
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 2.6e-14 83.6 188 33.5
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 4.4e-14 82.8 244 32.8
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.4e-14 82.8 210 34.3
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 4.4e-14 82.8 247 35.2
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 4.4e-14 82.8 299 31.8
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 5.8e-14 82.4 232 33.6
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 7.5e-14 82.0 117 43.6
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 1.3e-13 81.3 281 30.2
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 1.7e-13 80.9 203 33.5
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.7e-13 80.9 279 31.9
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 2.2e-13 80.5 216 31.0
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 2.2e-13 80.5 222 30.6
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 2.9e-13 80.1 104 46.2
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 2.9e-13 80.1 313 29.7
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.7e-13 79.7 282 31.2
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 3.7e-13 79.7 149 38.3
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 1.1e-12 78.2 113 44.2
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 1.4e-12 77.8 288 29.2
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.9e-12 77.4 282 29.8
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.9e-12 77.4 285 30.2
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 2.4e-12 77.0 244 31.6
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 2.4e-12 77.0 155 35.5
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.2e-12 76.6 267 29.2
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 9.2e-12 75.1 294 29.3
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 9.2e-12 75.1 118 43.2
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.2e-11 74.7 224 31.7
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.6e-11 74.3 261 31.0
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 2.7e-11 73.6 263 30.0
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 2.7e-11 73.6 282 30.9
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 3.5e-11 73.2 60 56.7
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 4.6e-11 72.8 262 30.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 7.8e-11 72.0 286 29.4
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.0e-10 71.6 272 29.4
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.3e-10 71.2 312 31.1
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.7e-10 70.9 69 53.6
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 1.7e-10 70.9 109 37.6
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 5.0e-10 69.3 109 39.4
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 6.6e-10 68.9 141 34.8
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 8.6e-10 68.6 267 30.0
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.5e-09 67.0 155 34.8
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 3.3e-09 66.6 158 35.4
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 7.3e-09 65.5 232 30.2
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.2e-08 64.7 52 57.7
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 1.4e-07 61.2 89 39.3
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.3e-07 60.5 295 26.1
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 5.2e-07 59.3 223 26.5
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 1.2e-06 58.2 121 34.7
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.5e-06 57.8 287 27.9
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 2.0e-06 57.4 302 26.5
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 3.4e-06 56.6 119 36.1
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.4e-06 56.2 144 33.3
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 7.5e-06 55.5 88 42.0


User provided reference genes

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