Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 6.9e-256 886.7 420 100.0
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 2.1e-233 812.0 418 90.7
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 6.5e-214 747.3 419 81.6
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 1.1e-213 746.5 417 82.5
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 3.2e-213 745.0 419 81.6
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 4.2e-213 744.6 394 86.3
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 4.2e-213 744.6 421 81.5
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 7.2e-213 743.8 419 82.3
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 7.2e-213 743.8 421 81.0
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 2.7e-212 741.9 418 81.6
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.7e-212 741.9 419 80.7
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 3.6e-212 741.5 421 79.8
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 6.1e-212 740.7 421 81.0
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 7.9e-212 740.3 417 80.6
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 1.4e-211 739.6 418 81.1
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.4e-211 739.6 420 81.9
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 3.9e-211 738.0 417 80.8
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 3.9e-211 738.0 416 81.0
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 1.5e-210 736.1 418 81.1
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 4.4e-210 734.6 418 80.1
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 5.7e-210 734.2 419 81.4
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 5.7e-210 734.2 413 81.4
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 7.4e-210 733.8 416 80.8
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 9.7e-210 733.4 419 81.4
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 6.3e-209 730.7 418 80.9
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 8.2e-209 730.3 419 79.0
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 8.2e-209 730.3 419 79.2
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 1.1e-208 729.9 421 80.0
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 1.1e-208 729.9 417 80.8
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 1.4e-208 729.6 416 81.5
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.8e-208 729.2 416 79.3
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 1.8e-208 729.2 420 80.0
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 1.8e-208 729.2 418 79.9
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 4.1e-208 728.0 416 80.0
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 5.3e-208 727.6 419 79.5
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 7.0e-208 727.2 417 79.6
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 9.1e-208 726.9 461 74.8
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 1.2e-207 726.5 416 79.1
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 1.2e-207 726.5 419 78.8
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.6e-207 726.1 421 78.9
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 2.0e-207 725.7 417 80.3
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 2.0e-207 725.7 419 79.2
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.6e-207 725.3 418 79.9
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 7.7e-207 723.8 418 79.7
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.9e-206 721.8 417 80.1
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 3.8e-206 721.5 417 78.9
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 5.0e-206 721.1 421 79.6
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.0e-206 721.1 417 79.9
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 6.5e-206 720.7 416 79.6
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 6.5e-206 720.7 419 78.8
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 8.5e-206 720.3 418 76.8
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.1e-205 719.9 418 79.7
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.5e-205 719.5 417 79.9
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.5e-205 719.5 418 78.5
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 2.5e-205 718.8 454 74.0
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 4.2e-205 718.0 418 76.6
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 7.2e-205 717.2 417 78.7
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 1.6e-204 716.1 422 78.4
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.0e-203 713.4 417 78.9
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 1.8e-203 712.6 420 78.1
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 2.3e-203 712.2 419 77.6
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 3.0e-203 711.8 419 77.1
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 8.8e-203 710.3 400 84.5
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.5e-202 709.5 446 75.8
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.6e-202 708.8 446 75.6
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 2.6e-202 708.8 418 77.5
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 3.3e-202 708.4 506 67.4
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.4e-202 708.0 417 78.2
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 5.7e-202 707.6 402 80.6
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.5e-202 707.2 417 78.2
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 1.3e-201 706.4 402 80.6
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 1.7e-201 706.1 415 78.3
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 2.8e-201 705.3 417 76.3
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 4.8e-201 704.5 401 80.8
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 4.8e-201 704.5 401 80.8
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 1.4e-200 703.0 424 77.4
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 4.1e-200 701.4 416 75.5
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 5.3e-200 701.0 415 75.4
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.0e-200 700.7 417 77.5
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 4.5e-199 698.0 420 76.4
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 1.0e-198 696.8 415 75.4
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 1.3e-198 696.4 416 75.2
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 1.7e-198 696.0 400 79.5
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 2.2e-198 695.7 416 75.0
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 2.9e-198 695.3 419 75.9
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 6.5e-198 694.1 421 76.2
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 8.5e-198 693.7 416 75.0
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 2.5e-197 692.2 419 75.7
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 2.5e-197 692.2 416 75.2
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 5.5e-197 691.0 397 81.1
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 7.2e-197 690.6 420 75.5
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 7.2e-197 690.6 421 75.5
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 7.2e-197 690.6 415 75.4
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 2.1e-196 689.1 416 75.5
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 3.6e-196 688.3 458 70.5
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 9.8e-194 680.2 412 75.5
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 8.5e-190 667.2 425 71.8
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 8.5e-190 667.2 426 71.4
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 3.2e-189 665.2 429 73.0
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 4.2e-189 664.8 419 73.5
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 2.8e-188 662.1 404 78.0
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 4.0e-187 658.3 432 72.9
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 7.5e-186 654.1 418 69.6
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 2.2e-185 652.5 420 69.3
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 1.1e-184 650.2 426 72.3
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 3.1e-184 648.7 456 68.9
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 4.5e-183 644.8 384 75.0
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.5e-181 639.8 418 71.8
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 4.7e-180 634.8 418 73.9
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 5.2e-179 631.3 419 72.3
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 2.0e-167 592.8 300 89.0
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.5e-165 586.6 419 66.1
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 1.2e-162 577.0 375 73.3
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 4.4e-162 575.1 415 62.4
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 7.5e-162 574.3 416 65.6
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 2.3e-158 562.8 419 65.2
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 4.7e-156 555.1 358 68.7
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 6.8e-155 551.2 420 62.1
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 7.6e-154 547.7 439 64.7
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 4.9e-145 518.5 358 67.3
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 7.1e-136 488.0 421 54.4
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 5.3e-131 471.9 274 77.4
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.0e-126 457.6 465 54.0
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.5e-125 453.8 465 53.8
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 6.2e-124 448.4 471 48.6
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 8.2e-116 421.4 469 46.1
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 6.3e-108 395.2 423 49.4
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.3e-48 195.7 115 75.7
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.6e-31 140.2 115 59.1
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 1.4e-30 138.3 104 63.5
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 1.8e-30 137.9 92 72.8
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 2.4e-30 137.5 89 69.7
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 2.4e-30 137.5 89 69.7
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 1.1e-19 102.1 137 45.3
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 1.4e-19 101.7 63 73.0
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 1.2e-18 98.6 66 68.2
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 2.1e-18 97.8 66 66.7
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.1e-18 97.8 55 80.0
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 8.7e-17 92.4 64 65.6
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.6e-08 63.2 68 48.5
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 4.8e-07 60.1 37 67.6
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.3e-06 56.6 120 32.5
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.3e-06 56.6 205 25.9
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 6.9e-06 56.2 121 33.9


User provided reference genes

Program Settings