Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g19623 Beta vulgaris HOM05D000916 ORTHO05D088516 2.7e-58 228.4 111 100.0
EL10Ac6g13919 Beta vulgaris HOM05D000916 ORTHO05D007921 4.3e-16 88.2 90 56.7
AUR62017447 Chenopodium quinoa HOM05D000916 ORTHO05D007921 6.3e-15 84.3 90 53.3
Ah.02g128670 Amaranthus hybridus HOM05D000916 ORTHO05D007921 2.4e-14 82.4 90 52.2
AUR62032516 Chenopodium quinoa HOM05D000916 ORTHO05D007921 6.9e-14 80.9 90 52.2
Cc08_g11570 Coffea canephora HOM05D000916 ORTHO05D007921 4.5e-13 78.2 90 48.9
Aqoxy6G00009 Aquilegia oxysepala HOM05D000916 ORTHO05D007921 7.6e-13 77.4 90 51.1
Ciclev10020543m.g Citrus clementina HOM05D000916 ORTHO05D007921 7.6e-13 77.4 90 50.0
Ciclev10024267m.g Citrus clementina HOM05D000916 ORTHO05D007921 1.0e-12 77.0 90 50.0
Peaxi162Scf00047g00074 Petunia axillaris HOM05D000916 ORTHO05D007921 1.0e-12 77.0 90 48.9
Lsat_1_v5_gn_4_131361 Lactuca sativa HOM05D000916 ORTHO05D007921 1.3e-12 76.6 90 48.9
Sed0003753 Sechium edule HOM05D000916 ORTHO05D007921 1.3e-12 76.6 90 50.0
Ciclev10021411m.g Citrus clementina HOM05D000916 ORTHO05D007921 1.7e-12 76.3 90 48.9
TPR.G16625 Trifolium pratense HOM05D000916 ORTHO05D007921 1.7e-12 76.3 90 47.8
Atru.chr6.10 Acer truncatum HOM05D000916 ORTHO05D007921 2.2e-12 75.9 91 48.4
Lalb_Chr02g0149821 Lupinus albus HOM05D000916 ORTHO05D007921 2.2e-12 75.9 90 47.8
Medtr1g076920 Medicago truncatula HOM05D000916 ORTHO05D007921 2.2e-12 75.9 90 47.8
vmacro00901 Vaccinium macrocarpon HOM05D000916 ORTHO05D007921 2.2e-12 75.9 90 46.7
Zm00001eb349130 Zea mays HOM05D000916 ORTHO05D007921 2.2e-12 75.9 91 50.5
GSVIVG01037084001 Vitis vinifera HOM05D000916 ORTHO05D007921 2.9e-12 75.5 90 46.7
Haze_13434 Corylus avellana HOM05D000916 ORTHO05D007921 3.8e-12 75.1 90 48.9
Hma1.2p1_0278F.1_g111780 Hydrangea macrophylla HOM05D000916 ORTHO05D007921 3.8e-12 75.1 90 47.8
Hma1.2p1_0278F.1_g111790 Hydrangea macrophylla HOM05D000916 ORTHO05D007921 3.8e-12 75.1 90 47.8
Oeu051786.1 Olea europaea HOM05D000916 ORTHO05D007921 3.8e-12 75.1 90 48.9
Ca_09901_v3 Cicer arietinum L. HOM05D000916 ORTHO05D007921 5.0e-12 74.7 90 46.7
Nn5g27096 Nelumbo nucifera HOM05D000916 ORTHO05D007921 6.5e-12 74.3 90 46.7
Solyc02g070490.4 Solanum lycopersicum HOM05D000916 ORTHO05D007921 6.5e-12 74.3 90 47.8
Sopen02g019580 Solanum pennellii HOM05D000916 ORTHO05D007921 6.5e-12 74.3 90 47.8
CAN.G702.36 Capsicum annuum HOM05D000916 ORTHO05D007921 8.5e-12 73.9 90 47.8
Cfa022925 Carpinus fangiana HOM05D000916 ORTHO05D007921 8.5e-12 73.9 90 47.8
ECA232G4321 Erigeron canadensis HOM05D000916 ORTHO05D007921 8.5e-12 73.9 90 48.9
Lj7C414G3 Lonicera japonica HOM05D000916 ORTHO05D007921 8.5e-12 73.9 88 48.9
Nitab4.5_0002275g0030 Nicotiana tabacum HOM05D000916 ORTHO05D007921 8.5e-12 73.9 90 47.8
Psat6g112920 Pisum sativum HOM05D000916 ORTHO05D007921 8.5e-12 73.9 90 46.7
PGSC0003DMG400021092 Solanum tuberosum HOM05D000916 ORTHO05D007921 8.5e-12 73.9 90 47.8
MSTRG.25473 Avicennia marina HOM05D000916 ORTHO05D007921 1.1e-11 73.6 90 46.7
Cpa.g.sc21.224 Carica papaya HOM05D000916 ORTHO05D007921 1.1e-11 73.6 91 47.3
CsaV3_6G002450 Cucumis sativus L. HOM05D000916 ORTHO05D007921 1.1e-11 73.6 90 47.8
MBI03_g28954_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D007921 1.1e-11 73.6 90 44.4
Manes.16G046800 Manihot esculenta HOM05D000916 ORTHO05D007921 1.1e-11 73.6 105 42.9
Nitab4.5_0002744g0010 Nicotiana tabacum HOM05D000916 ORTHO05D007921 1.1e-11 73.6 90 46.7
ClCG08G002000 Citrullus lanatus HOM05D000916 ORTHO05D007921 1.4e-11 73.2 90 47.8
Ciclev10020551m.g Citrus clementina HOM05D000916 ORTHO05D007921 1.4e-11 73.2 90 47.8
QL08p042529 Quercus lobata HOM05D000916 ORTHO05D007921 1.4e-11 73.2 90 47.8
CSS0018791 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D007921 1.9e-11 72.8 90 45.6
CSS0033181 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D007921 1.9e-11 72.8 90 45.6
MELO3C025041.2 Cucumis melo HOM05D000916 ORTHO05D007921 1.9e-11 72.8 90 47.8
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 1.9e-11 72.8 109 42.2
VMungo0720G0569 Vigna mungo HOM05D000916 ORTHO05D007921 1.9e-11 72.8 90 46.7
Eucgr.F04110 Eucalyptus grandis HOM05D000916 ORTHO05D007921 2.5e-11 72.4 90 45.6
Phvul.007G113800 Phaseolus vulgaris HOM05D000916 ORTHO05D007921 2.5e-11 72.4 90 46.7
TAR629G2069 Trochodendron aralioides HOM05D000916 ORTHO05D007921 2.5e-11 72.4 90 45.6
Ciclev10021643m.g Citrus clementina HOM05D000916 ORTHO05D007921 3.2e-11 72.0 90 47.8
Duzib052G0187 Durio zibethinus HOM05D000916 ORTHO05D007921 3.2e-11 72.0 90 45.6
PGR102G2105 Punica granatum HOM05D000916 ORTHO05D007921 3.2e-11 72.0 90 45.6
Actinidia09044 Actinidia chinensis HOM05D000916 ORTHO05D007921 4.2e-11 71.6 90 45.6
Ciclev10021413m.g Citrus clementina HOM05D000916 ORTHO05D007921 4.2e-11 71.6 90 46.7
Ciclev10024539m.g Citrus clementina HOM05D000916 ORTHO05D007921 4.2e-11 71.6 90 45.6
Glyma.20G214000 Glycine max HOM05D000916 ORTHO05D007921 4.2e-11 71.6 90 46.7
PSO170G3269 Papaver somniferum HOM05D000916 ORTHO05D007921 4.2e-11 71.6 90 44.4
SGA_v2.0_scaffold118G32559 Striga asiatica HOM05D000916 ORTHO05D007921 4.2e-11 71.6 90 46.7
Dinv09241 Davidia involucrata HOM05D000916 ORTHO05D007921 5.5e-11 71.2 90 45.6
PSO017G2033 Papaver somniferum HOM05D000916 ORTHO05D007921 7.2e-11 70.9 90 44.4
SalBow7G2842 Salvia bowleyana HOM05D000916 ORTHO05D007921 7.2e-11 70.9 90 45.6
Thecc.02G150300 Theobroma cacao HOM05D000916 ORTHO05D007921 7.2e-11 70.9 90 45.6
Ciclev10024042m.g Citrus clementina HOM05D000916 ORTHO05D007921 9.4e-11 70.5 90 46.7
Lj5g0015287 Lotus japonicus HOM05D000916 ORTHO05D007921 9.4e-11 70.5 90 44.4
Os05g0419000 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D007921 9.4e-11 70.5 92 46.7
Prupe.1G353100 Prunus persica HOM05D000916 ORTHO05D007921 9.4e-11 70.5 93 46.2
FvH4_2g37190 Fragaria vesca HOM05D000916 ORTHO05D007921 1.2e-10 70.1 90 46.7
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.2e-10 70.1 90 46.7
FAN27G0145 Fragaria x ananassa HOM05D000916 ORTHO05D007921 1.2e-10 70.1 90 45.6
FAN27G0203 Fragaria x ananassa HOM05D000916 ORTHO05D007921 1.2e-10 70.1 90 46.7
TWI12G0975 Tripterygium wilfordii HOM05D000916 ORTHO05D007921 1.6e-10 69.7 90 46.7
arahy.Tifrunner.gnm1.ann1.G72GGE Arachis hypogaea HOM05D000916 ORTHO05D007921 2.7e-10 68.9 90 45.6
arahy.Tifrunner.gnm1.ann1.Y677VA Arachis hypogaea HOM05D000916 ORTHO05D007921 2.7e-10 68.9 90 45.6
Migut.C01319 Erythranthe guttata HOM05D000916 ORTHO05D007921 3.6e-10 68.6 90 43.3
RcHm_v2.0_Chr6g0304501 Rosa chinensis HOM05D000916 ORTHO05D007921 3.6e-10 68.6 90 44.4
ATR1089G163 Amborella trichopoda HOM05D000916 ORTHO05D007921 4.6e-10 68.2 90 44.4
CDE07G1353 Ceratophyllum demersum HOM05D000916 ORTHO05D007921 4.6e-10 68.2 90 41.1
DCAR_014544 Daucus carota HOM05D000916 ORTHO05D007921 7.9e-10 67.4 92 44.6
Pp3c9_30 Physcomitrium patens HOM05D000916 ORTHO05D007921 7.9e-10 67.4 90 44.4
Sabra19G0077100 Salix brachista HOM05D000916 ORTHO05D007921 1.4e-09 66.6 90 44.4
Sabra19G0079700 Salix brachista HOM05D000916 ORTHO05D007921 1.4e-09 66.6 90 44.4
THA.LOC104823867 Tarenaya hassleriana HOM05D000916 ORTHO05D007921 1.8e-09 66.2 90 43.3
Potri.019G063900 Populus trichocarpa HOM05D000916 ORTHO05D007921 2.3e-09 65.9 90 44.4
Gohir.A13G063400 Gossypium hirsutum HOM05D000916 ORTHO05D007921 8.8e-09 63.9 90 41.1
Gohir.D13G058800 Gossypium hirsutum HOM05D000916 ORTHO05D007921 8.8e-09 63.9 90 41.1
Gorai.013G066300 Gossypium raimondii HOM05D000916 ORTHO05D007921 8.8e-09 63.9 90 41.1
SMO361G0114 Selaginella moellendorffii HOM05D000916 ORTHO05D007921 8.8e-09 63.9 90 43.3
AT5G38520 Arabidopsis thaliana HOM05D000916 ORTHO05D007921 1.1e-08 63.5 90 41.1
SMO361G0121 Selaginella moellendorffii HOM05D000916 ORTHO05D007921 1.5e-08 63.2 90 43.3
Aa31LG9G17030 Aethionema arabicum HOM05D000916 ORTHO05D007921 2.5e-08 62.4 90 41.1
SEGI_01401 Sequoiadendron giganteum HOM05D000916 ORTHO05D007921 2.5e-08 62.4 97 37.1
Thhalv10027805m.g Eutrema salsugineum HOM05D000916 ORTHO05D007921 3.3e-08 62.0 90 40.0
Sp7g03540 Schrenkiella parvula HOM05D000916 ORTHO05D007921 3.3e-08 62.0 90 40.0
MD08G1001000 Malus domestica HOM05D000916 ORTHO05D007921 4.3e-08 61.6 98 41.8
Carub.0007s3739 Capsella rubella HOM05D000916 ORTHO05D007921 5.7e-08 61.2 90 40.0
BcaB02g08004 Brassica carinata HOM05D000916 ORTHO05D007921 7.4e-08 60.8 90 41.1
BcaC08g44384 Brassica carinata HOM05D000916 ORTHO05D007921 7.4e-08 60.8 90 40.0
A07p19750 Brassica napus HOM05D000916 ORTHO05D007921 7.4e-08 60.8 90 41.1
BolC6t37027H Brassica oleracea HOM05D000916 ORTHO05D007921 7.4e-08 60.8 90 40.0
BraA07t29675Z Brassica rapa HOM05D000916 ORTHO05D007921 7.4e-08 60.8 90 41.1
CARHR213920 Cardamine hirsuta HOM05D000916 ORTHO05D007921 1.3e-07 60.1 90 38.9
C06p18170 Brassica napus HOM05D000916 ORTHO05D007921 1.7e-07 59.7 90 40.0
Ciclev10023871m.g Citrus clementina HOM05D000916 ORTHO05D007921 8.2e-07 57.4 88 43.2
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 1.4e-06 56.6 35 74.3
EL10As1g23041 Beta vulgaris HOM05D007123 ORTHO05D010541 5.3e-06 54.7 38 68.4


User provided reference genes

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