Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 3.7e-163 578.2 297 100.0
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.8e-108 394.8 333 65.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 5.4e-90 335.1 323 58.8
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 4.8e-86 322.0 335 57.0
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 9.0e-69 264.6 301 51.2
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.0e-68 263.5 296 53.7
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.0e-67 261.2 297 50.5
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.7e-62 243.8 298 48.7
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 3.4e-60 236.1 298 47.7
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.1e-58 231.1 297 46.8
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.1e-58 231.1 297 48.5
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.1e-57 226.9 302 45.7
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 5.1e-56 222.2 301 45.8
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.7e-55 218.8 302 45.0
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 7.4e-55 218.4 317 45.1
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 4.8e-54 215.7 306 46.7
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.5e-52 210.7 305 44.6
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.2e-51 206.8 317 40.7
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 8.5e-51 204.9 308 46.4
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-50 204.1 309 43.0
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 7.2e-50 201.8 308 42.5
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.2e-49 201.1 298 43.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 2.7e-49 199.9 303 44.6
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 3.6e-49 199.5 305 44.6
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 8.0e-49 198.4 308 40.6
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 8.0e-49 198.4 294 45.9
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.0e-48 198.0 285 46.7
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.4e-48 197.6 294 45.6
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 2.3e-48 196.8 289 43.9
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 3.0e-48 196.4 324 40.7
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 5.2e-48 195.7 320 41.9
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 6.7e-48 195.3 301 43.5
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 6.7e-48 195.3 306 44.1
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 8.8e-48 194.9 292 44.9
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.4e-47 192.6 312 43.3
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 4.4e-47 192.6 300 42.3
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 5.7e-47 192.2 278 41.0
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 7.4e-47 191.8 308 40.9
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 2.2e-46 190.3 280 43.9
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.2e-46 190.3 303 41.9
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.8e-46 189.9 305 41.3
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.8e-46 189.1 288 43.8
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 8.2e-46 188.3 308 42.5
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 7.0e-45 185.3 300 41.0
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 9.1e-45 184.9 319 40.1
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 3.5e-44 183.0 355 38.3
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 3.5e-44 183.0 282 43.3
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 5.9e-44 182.2 347 38.6
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 7.7e-44 181.8 345 37.7
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.7e-43 180.6 383 35.8
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.8e-43 179.5 350 38.0
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 6.5e-43 178.7 321 41.1
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.1e-42 177.9 304 42.1
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.1e-42 177.9 321 38.9
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.9e-42 177.2 261 47.5
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 2.5e-42 176.8 306 41.8
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 4.2e-42 176.0 304 42.8
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 4.2e-42 176.0 311 39.5
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 5.5e-42 175.6 335 37.0
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.2e-42 175.3 305 40.0
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 2.1e-41 173.7 305 38.7
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 2.1e-41 173.7 283 41.7
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.6e-41 172.9 366 34.7
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 6.1e-41 172.2 349 35.8
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.0e-40 171.4 306 40.5
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.0e-40 171.4 298 40.3
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 1.4e-40 171.0 281 40.9
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 2.3e-40 170.2 307 42.0
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.2e-40 169.1 281 40.9
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 5.2e-40 169.1 291 39.9
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.2e-39 167.9 303 41.3
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.6e-39 166.8 250 44.8
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 2.6e-39 166.8 407 33.4
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.7e-39 164.9 304 38.8
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.3e-38 164.5 289 37.4
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.3e-38 164.5 410 33.4
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.2e-38 163.7 280 38.9
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.8e-37 160.6 391 33.2
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 2.4e-37 160.2 299 39.5
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 4.1e-37 159.5 383 34.5
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 1.0e-35 154.8 295 39.0
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.0e-35 154.8 364 36.3
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.3e-35 154.5 220 40.9
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.3e-35 154.5 382 33.5
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.2e-35 153.7 306 37.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.9e-35 153.3 384 32.6
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 5.0e-35 152.5 174 48.9
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 8.5e-35 151.8 359 34.3
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 8.5e-35 151.8 270 38.5
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 8.5e-35 151.8 288 38.9
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.5e-34 151.0 196 48.0
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-34 150.6 280 40.0
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 2.5e-34 150.2 267 38.6
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.2e-34 149.8 240 41.7
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.2e-34 149.4 166 52.4
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.2e-34 149.4 166 52.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 4.2e-34 149.4 278 39.2
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 5.5e-34 149.1 290 36.9
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 5.5e-34 149.1 264 36.0
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 5.5e-34 149.1 348 34.2
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.2e-33 147.9 292 37.3
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.7e-33 146.7 318 34.9
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 3.6e-33 146.4 273 35.9
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 3.6e-33 146.4 273 35.9
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.8e-32 144.1 233 41.6
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 3.0e-32 143.3 319 36.1
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 5.2e-32 142.5 297 35.4
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.2e-31 141.4 223 43.0
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.5e-31 141.0 318 34.0
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 5.7e-31 139.0 344 34.6
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 5.7e-31 139.0 407 31.4
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.3e-30 137.9 259 37.5
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.3e-30 137.9 259 37.5
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.7e-30 137.5 295 34.6
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.2e-30 137.1 291 35.7
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 3.7e-30 136.3 361 35.7
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.7e-30 136.3 172 46.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 4.8e-30 136.0 345 34.2
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 1.8e-29 134.0 269 35.3
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 4.1e-29 132.9 285 37.5
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 5.4e-29 132.5 140 49.3
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 5.4e-29 132.5 140 49.3
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 5.4e-29 132.5 264 37.9
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 9.1e-29 131.7 274 34.7
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.6e-28 131.0 139 48.9
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.7e-27 127.5 271 36.5
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.7e-27 127.5 246 38.2
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 1.7e-27 127.5 212 40.6
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 2.9e-27 126.7 175 41.1
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 3.8e-27 126.3 238 38.2
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 8.6e-27 125.2 112 54.5
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 8.6e-27 125.2 223 41.3
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.1e-26 124.8 292 33.2
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 2.5e-26 123.6 231 40.3
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 4.2e-26 122.9 175 44.0
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 9.5e-26 121.7 274 34.7
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 3.6e-25 119.8 181 42.5
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.4e-24 117.9 283 34.3
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.6e-23 113.6 267 34.8
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.7e-22 110.9 358 29.3
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.9e-22 109.4 287 32.4
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 4.1e-21 106.3 233 34.8
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.2e-21 105.1 381 28.6
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 3.9e-19 99.8 296 32.1
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.6e-19 99.0 117 48.7
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 9.5e-18 95.1 263 32.3
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.2e-17 94.7 251 31.9
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.0e-17 92.0 208 32.7
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.9e-16 88.6 84 51.2
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 5.4e-13 79.3 260 30.8
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.2e-13 78.6 319 27.0
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 7.8e-12 75.5 58 55.2
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 7.8e-12 75.5 120 45.0
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.3e-10 70.1 107 44.9
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 9.5e-10 68.6 146 34.2
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 2.9e-06 57.0 84 40.5
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 3.7e-06 56.6 286 28.3


User provided reference genes

Program Settings