Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 1.3e-207 726.1 362 100.0
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.0e-159 567.0 346 82.1
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 1.3e-154 550.1 362 75.4
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 7.5e-134 481.1 261 88.1
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 3.4e-126 455.7 362 64.9
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 2.4e-124 449.5 352 66.5
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 2.4e-124 449.5 352 66.5
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 5.4e-124 448.4 369 61.8
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.0e-123 446.4 354 67.2
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.0e-122 442.6 356 66.6
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.6e-122 441.4 354 66.4
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 1.6e-120 436.8 354 65.3
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 6.4e-117 424.9 353 62.3
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 1.1e-116 424.1 354 62.4
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 1.6e-115 420.2 352 63.1
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 2.7e-115 419.5 356 61.2
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 2.7e-115 419.5 360 61.9
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 4.6e-115 418.7 361 61.5
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 6.0e-115 418.3 357 61.9
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 6.6e-114 414.8 355 62.8
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 8.6e-114 414.5 354 62.4
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 1.5e-113 413.7 352 60.2
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 1.9e-113 413.3 355 61.7
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.3e-113 411.4 340 65.0
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 7.3e-113 411.4 353 62.3
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 2.8e-112 409.5 354 61.0
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 3.6e-112 409.1 370 58.6
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 3.6e-112 409.1 370 58.6
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 3.6e-112 409.1 370 58.6
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 8.9e-111 404.4 354 60.7
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 8.9e-111 404.4 368 59.2
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 2.6e-110 402.9 349 61.6
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 2.6e-110 402.9 352 60.5
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 4.4e-110 402.1 368 59.2
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 5.8e-110 401.7 356 61.2
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.5e-110 401.4 350 61.4
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 9.9e-110 401.0 349 60.5
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 2.2e-109 399.8 366 57.9
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 2.9e-109 399.4 369 57.7
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.7e-109 399.1 354 62.4
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 3.7e-109 399.1 369 59.1
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 1.1e-108 397.5 363 58.7
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 4.1e-108 395.6 352 59.4
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 4.1e-108 395.6 369 57.7
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 5.4e-108 395.2 357 60.2
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 5.4e-108 395.2 357 60.2
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 7.1e-108 394.8 358 58.7
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 7.1e-108 394.8 359 59.3
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 7.1e-108 394.8 367 58.6
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 2.7e-107 392.9 355 58.6
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 6.0e-107 391.7 352 58.8
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 1.0e-106 391.0 352 59.1
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 1.0e-106 391.0 365 58.6
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 1.3e-106 390.6 368 57.9
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 2.3e-106 389.8 359 58.8
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 1.9e-105 386.7 363 58.4
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 3.3e-105 386.0 369 58.0
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 3.3e-105 386.0 365 57.8
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 4.3e-105 385.6 375 55.7
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.6e-104 383.6 352 58.2
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 2.8e-104 382.9 358 56.4
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 2.8e-104 382.9 360 58.1
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 6.2e-104 381.7 357 57.4
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 1.1e-103 380.9 357 57.1
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 1.4e-103 380.6 361 56.0
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 3.1e-103 379.4 340 59.4
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 4.0e-103 379.0 357 57.1
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 4.0e-103 379.0 359 55.4
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 4.0e-103 379.0 384 55.5
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 5.2e-103 378.6 356 57.9
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 2.6e-102 376.3 359 57.4
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 2.6e-102 376.3 373 55.5
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 3.4e-102 375.9 385 54.8
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 5.8e-102 375.2 366 54.6
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 9.9e-102 374.4 363 54.8
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 2.9e-101 372.9 338 60.7
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 4.9e-101 372.1 364 54.1
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 8.4e-101 371.3 343 58.6
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 1.4e-100 370.5 360 55.8
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 2.4e-100 369.8 366 53.6
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 3.2e-100 369.4 361 54.6
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 3.2e-100 369.4 362 56.4
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 9.2e-100 367.9 359 55.7
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 1.6e-99 367.1 360 55.6
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 8.6e-98 361.3 362 53.9
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 9.6e-97 357.8 355 53.5
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 2.1e-96 356.7 373 54.7
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 6.2e-96 355.1 355 53.2
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 4.2e-92 342.4 342 55.0
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 7.1e-92 341.7 342 55.3
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 9.3e-92 341.3 342 55.3
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 2.3e-90 336.7 341 55.4
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 6.6e-90 335.1 361 53.5
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 8.7e-90 334.7 358 52.2
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 1.7e-85 320.5 343 52.5
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 1.8e-82 310.5 346 48.0
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 3.3e-81 306.2 348 47.7
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 3.2e-68 263.1 246 59.8
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 4.2e-68 262.7 285 50.9
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 1.1e-63 248.1 164 67.7
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 9.0e-63 245.0 353 40.5
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 2.0e-62 243.8 380 38.9
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 5.9e-62 242.3 233 57.5
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 5.3e-55 219.2 209 56.0
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.8e-53 213.0 209 58.9
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 8.5e-53 211.8 304 41.4
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.2e-52 208.8 209 58.9
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.1e-51 205.7 208 58.7
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 1.5e-49 201.1 148 69.6
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.7e-48 197.6 206 56.3
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 5.5e-44 182.6 243 46.5
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 1.6e-43 181.0 222 50.9
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.1e-43 180.6 122 71.3
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 8.0e-43 178.7 139 59.7
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 6.7e-42 175.6 378 31.0
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 2.7e-30 137.1 168 42.3
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.0e-29 135.2 208 44.2
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.6e-21 105.5 66 77.3
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.6e-19 100.1 66 72.7
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.2e-15 85.5 66 66.7
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 1.4e-10 71.6 107 44.9
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 2.3e-10 70.9 156 28.8
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 1.3e-08 65.1 52 53.8
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 1.9e-07 61.2 53 54.7
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 1.9e-07 61.2 53 54.7
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 1.9e-07 61.2 53 54.7
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 1.9e-07 61.2 56 53.6
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 7.0e-07 59.3 57 47.4


User provided reference genes

Program Settings