Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 2.0e-92 342.4 171 100.0
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 5.9e-89 330.9 171 97.7
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 8.0e-70 267.3 220 65.5
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 6.2e-62 241.1 204 65.7
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 3.5e-57 225.3 321 45.5
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 6.0e-49 198.0 171 57.9
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.9e-47 193.0 155 58.1
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 8.9e-45 184.1 216 46.3
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 7.1e-42 174.5 212 44.3
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 3.5e-41 172.2 154 51.3
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.8e-41 171.0 163 49.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.1e-37 159.1 211 42.7
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 7.6e-36 154.5 196 41.8
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 3.8e-35 152.1 203 40.4
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 4.9e-35 151.8 215 39.1
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 4.9e-35 151.8 205 40.0
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 6.4e-35 151.4 203 41.4
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 6.4e-35 151.4 223 38.1
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 8.4e-35 151.0 217 37.3
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.1e-34 150.6 203 41.4
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.4e-34 150.2 205 39.5
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 4.2e-34 148.7 211 38.4
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 5.4e-34 148.3 219 38.4
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 7.1e-34 147.9 202 38.6
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 7.1e-34 147.9 204 37.7
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 7.1e-34 147.9 204 37.7
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 7.1e-34 147.9 203 38.9
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 2.1e-33 146.4 216 38.9
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.1e-33 146.4 215 38.6
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 4.6e-33 145.2 210 38.1
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 4.6e-33 145.2 210 38.1
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 4.6e-33 145.2 219 37.4
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 4.6e-33 145.2 216 38.9
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 6.0e-33 144.8 211 37.9
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 6.0e-33 144.8 216 38.4
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 6.0e-33 144.8 205 37.6
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 7.8e-33 144.4 217 37.8
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.0e-32 144.1 203 36.9
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.0e-32 144.1 223 37.2
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.3e-32 143.7 202 37.6
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.7e-32 143.3 221 38.9
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.7e-32 143.3 203 38.4
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 3.0e-32 142.5 203 37.9
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 3.0e-32 142.5 200 39.5
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 3.0e-32 142.5 202 38.1
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 3.0e-32 142.5 208 36.5
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 3.9e-32 142.1 206 37.9
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 3.9e-32 142.1 210 37.6
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 3.9e-32 142.1 210 37.6
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 3.9e-32 142.1 210 37.6
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 3.9e-32 142.1 205 37.1
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 5.1e-32 141.7 203 37.9
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 6.6e-32 141.4 216 37.0
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 8.7e-32 141.0 210 37.1
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 8.7e-32 141.0 201 38.8
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.1e-31 140.6 216 37.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-31 140.2 194 42.8
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.5e-31 140.2 216 36.6
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.5e-31 140.2 216 37.5
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.5e-31 140.2 210 39.5
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.5e-31 140.2 217 36.9
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 1.9e-31 139.8 210 36.7
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.5e-31 139.4 209 35.4
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.3e-31 139.0 212 37.3
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 4.3e-31 138.7 201 37.8
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.3e-31 138.7 216 37.0
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.3e-31 138.7 212 36.8
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 4.3e-31 138.7 203 37.4
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 4.3e-31 138.7 212 37.3
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 4.3e-31 138.7 212 37.3
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 5.6e-31 138.3 202 36.6
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 5.6e-31 138.3 212 37.3
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 7.3e-31 137.9 211 37.0
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 7.3e-31 137.9 203 39.4
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 9.6e-31 137.5 203 38.4
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.3e-30 137.1 216 36.1
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.3e-30 137.1 203 36.5
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.6e-30 136.7 203 38.9
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.6e-30 136.7 203 38.9
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 1.6e-30 136.7 203 38.9
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 3.6e-30 135.6 198 41.4
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 3.6e-30 135.6 203 37.9
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 4.8e-30 135.2 212 36.3
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 6.2e-30 134.8 210 34.3
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 8.1e-30 134.4 200 38.5
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 8.1e-30 134.4 214 38.3
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.1e-29 134.0 209 36.8
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.4e-29 133.7 201 36.3
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.8e-29 133.3 203 35.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.8e-29 133.3 203 35.0
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 2.4e-29 132.9 203 36.9
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.4e-29 132.9 203 35.0
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 3.1e-29 132.5 203 36.9
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 4.0e-29 132.1 137 47.4
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 4.0e-29 132.1 200 36.0
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 4.0e-29 132.1 201 35.8
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 5.3e-29 131.7 216 35.6
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 5.3e-29 131.7 212 34.4
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 6.9e-29 131.3 205 37.1
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 6.9e-29 131.3 210 35.2
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 9.0e-29 131.0 120 50.8
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 9.0e-29 131.0 214 36.0
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 1.2e-28 130.6 126 50.8
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.2e-28 130.6 216 35.2
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.5e-28 130.2 202 35.1
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 2.0e-28 129.8 211 36.0
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 3.4e-28 129.0 203 35.5
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 4.5e-28 128.6 186 40.9
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 9.9e-28 127.5 203 36.0
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.2e-27 126.3 203 36.5
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 3.8e-27 125.6 210 34.8
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 4.9e-27 125.2 124 47.6
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 8.4e-27 124.4 125 49.6
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 8.4e-27 124.4 111 51.4
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 3.2e-26 122.5 203 34.5
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 3.2e-26 122.5 203 36.0
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 7.1e-26 121.3 203 34.0
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.3e-26 120.9 204 31.9
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.2e-25 120.6 204 32.8
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 1.6e-25 120.2 111 48.6
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.6e-25 120.2 124 47.6
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 2.1e-25 119.8 111 48.6
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.5e-25 119.0 175 41.1
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 4.6e-25 118.6 111 49.5
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 6.0e-25 118.2 203 34.0
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.3e-24 117.1 218 33.0
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.8e-24 116.7 111 46.8
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.0e-24 115.9 124 45.2
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.0e-24 115.9 124 45.2
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 8.7e-24 114.4 186 37.1
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.1e-23 114.0 203 34.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.9e-23 113.2 198 34.3
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 7.4e-23 111.3 204 34.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.8e-22 109.4 111 45.9
AUR62038204 Chenopodium quinoa HOM05D003335 ORTHO05D034347 3.1e-21 105.9 86 67.4
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.6e-20 102.8 171 34.5
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 4.5e-20 102.1 202 32.2
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 7.6e-20 101.3 213 31.5
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.7e-19 100.1 194 33.0
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.9e-19 99.4 124 41.9
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 1.4e-18 97.1 213 32.9
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 3.2e-18 95.9 154 35.7
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 7.1e-18 94.7 110 40.9
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 7.1e-18 94.7 156 36.5
AUR62033354 Chenopodium quinoa HOM05D003335 ORTHO05D003853 1.6e-17 93.6 76 68.4
AUR62033356 Chenopodium quinoa HOM05D042864 ORTHO05D034347 1.6e-17 93.6 76 68.4
AUR62033359 Chenopodium quinoa HOM05D042864 ORTHO05D034347 1.6e-17 93.6 76 68.4
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.1e-17 93.2 209 28.7
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.3e-15 85.9 88 42.0
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 6.5e-11 71.6 66 54.5
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 1.4e-10 70.5 71 46.5
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.4e-10 70.5 71 42.3
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.3e-06 57.4 74 41.9


User provided reference genes

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