Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 2.8e-305 1051.2 561 100.0
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 4.1e-256 887.9 583 84.4
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 9.2e-256 886.7 583 84.4
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 2.8e-252 875.2 583 81.3
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 1.3e-188 663.7 583 62.8
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 3.1e-187 659.1 582 61.9
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 9.0e-187 657.5 580 62.6
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 7.7e-186 654.4 583 61.2
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 6.5e-185 651.4 587 61.8
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 1.4e-182 643.7 581 61.1
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 6.3e-180 634.8 584 60.4
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 8.2e-180 634.4 581 59.6
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.4e-179 633.6 586 60.1
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 3.1e-179 632.5 587 59.5
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 3.1e-179 632.5 581 60.6
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 3.1e-179 632.5 582 60.7
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 7.7e-178 627.9 585 62.2
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.0e-177 627.5 578 60.2
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.3e-177 627.1 581 60.2
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 6.5e-177 624.8 581 61.1
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 3.2e-176 622.5 581 59.9
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 3.2e-176 622.5 578 59.5
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 7.2e-176 621.3 581 60.1
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 9.4e-176 620.9 578 59.9
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.8e-174 616.7 577 59.1
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.8e-174 616.7 600 61.7
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 3.9e-174 615.5 581 59.6
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 5.2e-174 615.1 577 58.4
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 6.7e-174 614.8 577 58.9
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 6.7e-174 614.8 578 59.0
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 8.8e-174 614.4 583 59.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.7e-172 610.1 577 58.8
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.4e-171 607.1 589 58.4
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.4e-171 606.3 580 58.6
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 5.3e-171 605.1 584 58.4
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.3e-171 605.1 599 57.3
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.6e-170 603.6 588 56.8
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.0e-170 603.2 582 58.2
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 5.9e-170 601.7 583 58.0
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 2.2e-169 599.7 580 58.1
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.9e-169 599.4 539 61.4
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 3.8e-169 599.0 585 58.5
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.5e-169 597.8 582 58.8
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 2.5e-168 596.3 582 58.4
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.2e-168 595.9 585 58.8
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 5.5e-168 595.1 584 57.2
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 9.4e-168 594.3 584 57.4
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.7e-167 592.8 631 54.4
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 4.7e-167 592.0 584 57.2
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 5.2e-166 588.6 580 57.8
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 5.7e-165 585.1 580 57.2
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.3e-164 583.9 580 57.2
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.7e-164 583.6 590 57.5
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.8e-163 580.1 590 56.6
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 7.0e-163 578.2 585 57.8
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.2e-162 577.4 585 58.6
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 1.6e-162 577.0 580 57.9
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 2.7e-162 576.2 585 58.3
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 7.7e-162 574.7 580 57.6
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 2.2e-161 573.2 580 57.2
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 3.8e-161 572.4 581 55.8
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 6.5e-161 571.6 588 55.3
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.1e-160 570.9 586 57.2
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 7.2e-160 568.2 587 54.5
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 9.4e-160 567.8 580 57.2
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 6.8e-158 561.6 546 57.7
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.5e-157 560.5 663 51.6
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.5e-157 560.5 584 56.2
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 2.6e-157 559.7 485 61.9
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.7e-156 557.0 581 57.1
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.1e-155 554.3 548 57.8
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 4.1e-155 552.4 584 55.0
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 2.7e-154 549.7 592 55.9
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.2e-153 546.6 509 59.3
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 5.0e-153 545.4 638 51.3
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 6.5e-153 545.0 581 55.6
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 4.7e-151 538.9 568 56.2
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.1e-151 538.5 714 46.4
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 1.0e-150 537.7 596 53.0
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.7e-148 530.4 656 49.7
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.7e-148 530.4 590 53.2
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.7e-148 529.3 715 46.4
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 5.9e-146 521.9 590 54.9
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 2.9e-145 519.6 468 60.3
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 6.6e-145 518.5 582 53.1
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.4e-142 510.8 533 55.3
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 2.7e-138 496.5 593 51.9
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.5e-136 490.7 590 51.4
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 9.5e-136 488.0 595 49.6
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 6.2e-135 485.3 590 51.0
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 2.3e-134 483.4 592 50.5
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 8.9e-134 481.5 600 50.5
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 4.4e-133 479.2 592 50.3
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 5.8e-133 478.8 591 50.4
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.1e-131 474.6 591 50.1
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.6e-130 470.7 540 51.9
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 2.0e-130 470.3 593 49.7
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 7.8e-130 468.4 596 50.0
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.3e-129 467.6 586 50.3
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.5e-128 463.4 585 49.9
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 2.2e-124 450.3 414 63.3
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 4.9e-124 449.1 587 48.6
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 9.2e-123 444.9 596 49.0
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 9.2e-123 444.9 596 49.0
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 4.6e-122 442.6 596 48.8
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 4.6e-122 442.6 582 48.1
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 6.0e-122 442.2 595 46.9
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 4.0e-118 429.5 596 47.7
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 5.2e-118 429.1 438 56.2
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 2.0e-117 427.2 416 57.9
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 2.6e-117 426.8 596 47.5
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 4.3e-112 409.5 583 44.3
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 2.0e-109 400.6 587 45.5
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.4e-107 392.5 530 46.8
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 7.9e-82 308.9 396 47.5
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.0e-81 308.5 548 40.7
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.8e-79 300.4 573 39.4
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.9e-75 287.7 344 47.7
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 5.7e-72 276.2 311 54.3
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 5.9e-61 239.6 519 36.0
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 3.7e-47 193.7 240 42.5
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.0e-37 161.4 404 33.2
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.8e-25 121.7 192 43.2
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 8.9e-17 92.8 78 62.8
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 2.4e-14 84.7 176 28.4
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.7e-13 81.3 239 28.5
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 3.5e-13 80.9 78 55.1
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.3e-12 79.0 74 56.8
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.7e-12 78.6 75 56.0
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 8.6e-12 76.3 69 63.8
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.5e-11 74.7 77 51.9
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.6e-11 73.6 232 28.0
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.6e-11 73.6 203 27.6
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 1.6e-10 72.0 221 28.1
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 2.4e-06 58.2 41 68.3


User provided reference genes

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