Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac7g17764 Beta vulgaris HOM05D002889 ORTHO05D003366 6.3e-45 183.7 93 100.0
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 1.3e-37 159.5 84 96.4
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 4.9e-37 157.5 84 94.0
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 6.4e-37 157.1 84 94.0
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 1.4e-36 156.0 84 92.9
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 2.4e-36 155.2 82 93.9
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 4.1e-36 154.5 84 92.9
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 4.1e-36 154.5 83 92.8
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.4e-36 154.1 83 91.6
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 5.4e-36 154.1 82 91.5
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 5.4e-36 154.1 82 91.5
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 7.0e-36 153.7 84 92.9
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 9.2e-36 153.3 82 93.9
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.2e-35 152.9 83 89.2
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 1.2e-35 152.9 84 91.7
CAN.G154.1 Capsicum annuum HOM05D002889 ORTHO05D003366 1.6e-35 152.5 83 90.4
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.6e-35 152.5 84 90.5
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.6e-35 152.5 84 90.5
Nitab4.5_0004779g0010 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.6e-35 152.5 83 90.4
GSVIVG01028494001 Vitis vinifera HOM05D002889 ORTHO05D003366 2.0e-35 152.1 82 92.7
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 2.7e-35 151.8 84 90.5
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 2.7e-35 151.8 82 92.7
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 3.5e-35 151.4 84 91.7
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 3.5e-35 151.4 82 91.5
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 3.5e-35 151.4 82 90.2
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 4.6e-35 151.0 84 89.3
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 4.6e-35 151.0 81 90.1
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 4.6e-35 151.0 82 91.5
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 6.0e-35 150.6 84 91.7
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 6.0e-35 150.6 84 90.5
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 6.0e-35 150.6 82 91.5
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 6.0e-35 150.6 84 90.5
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 7.8e-35 150.2 82 91.5
Oeu015915.1 Olea europaea HOM05D002889 ORTHO05D003366 7.8e-35 150.2 84 89.3
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 1.0e-34 149.8 82 90.2
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 1.0e-34 149.8 82 90.2
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 1.3e-34 149.4 83 89.2
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 1.3e-34 149.4 83 89.2
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 1.7e-34 149.1 82 90.2
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 1.7e-34 149.1 82 90.2
Lj1A81T56 Lonicera japonica HOM05D002889 ORTHO05D003366 1.7e-34 149.1 87 86.2
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 1.7e-34 149.1 83 89.2
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 1.7e-34 149.1 84 89.3
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.7e-34 149.1 81 91.4
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 2.3e-34 148.7 82 90.2
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 2.3e-34 148.7 82 90.2
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 2.3e-34 148.7 81 90.1
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 2.3e-34 148.7 82 89.0
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 2.3e-34 148.7 82 89.0
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 2.3e-34 148.7 82 90.2
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 2.3e-34 148.7 82 90.2
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 2.3e-34 148.7 82 89.0
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 3.0e-34 148.3 82 89.0
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 3.0e-34 148.3 82 87.8
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 3.0e-34 148.3 82 89.0
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 3.0e-34 148.3 83 89.2
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 3.0e-34 148.3 80 91.2
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 3.0e-34 148.3 83 89.2
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 3.9e-34 147.9 82 90.2
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 3.9e-34 147.9 81 91.4
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 3.9e-34 147.9 82 90.2
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 3.9e-34 147.9 82 89.0
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 5.0e-34 147.5 82 87.8
Dinv19240 Davidia involucrata HOM05D002889 ORTHO05D003366 5.0e-34 147.5 82 89.0
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.0e-34 147.5 81 90.1
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.0e-34 147.5 81 90.1
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 5.0e-34 147.5 81 90.1
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 6.6e-34 147.1 81 90.1
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 6.6e-34 147.1 82 89.0
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 6.6e-34 147.1 82 87.8
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 6.6e-34 147.1 83 88.0
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 6.6e-34 147.1 83 88.0
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 6.6e-34 147.1 82 89.0
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 6.6e-34 147.1 80 91.2
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 6.6e-34 147.1 83 88.0
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 8.6e-34 146.7 82 89.0
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 1.1e-33 146.4 82 87.8
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 1.1e-33 146.4 81 90.1
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 1.1e-33 146.4 82 87.8
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 1.1e-33 146.4 82 89.0
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 1.1e-33 146.4 82 87.8
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 1.1e-33 146.4 81 90.1
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 1.1e-33 146.4 84 86.9
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 1.1e-33 146.4 82 87.8
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 1.5e-33 146.0 82 87.8
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 1.5e-33 146.0 82 87.8
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 1.9e-33 145.6 81 88.9
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 1.9e-33 145.6 81 88.9
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 1.9e-33 145.6 81 88.9
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 1.9e-33 145.6 81 88.9
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 1.9e-33 145.6 79 92.4
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 1.9e-33 145.6 79 92.4
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 1.9e-33 145.6 82 87.8
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 2.5e-33 145.2 82 87.8
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 2.5e-33 145.2 80 90.0
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 2.5e-33 145.2 80 90.0
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 2.5e-33 145.2 80 90.0
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 2.5e-33 145.2 80 90.0
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 2.5e-33 145.2 82 87.8
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 2.5e-33 145.2 82 87.8
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 2.5e-33 145.2 83 86.7
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 2.5e-33 145.2 82 86.6
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 2.5e-33 145.2 82 86.6
Actinidia37572 Actinidia chinensis HOM05D002889 ORTHO05D003366 3.3e-33 144.8 83 86.7
Psat3g050120 Pisum sativum HOM05D002889 ORTHO05D003366 3.3e-33 144.8 81 87.7
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 4.3e-33 144.4 83 86.7
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 4.3e-33 144.4 80 88.8
TWI59G1284 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 4.3e-33 144.4 79 91.1
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 5.6e-33 144.1 82 86.6
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 5.6e-33 144.1 82 86.6
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 7.3e-33 143.7 82 86.6
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 7.3e-33 143.7 82 84.1
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 7.3e-33 143.7 82 86.6
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 9.5e-33 143.3 80 88.8
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 9.5e-33 143.3 80 88.8
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 1.2e-32 142.9 81 87.7
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 1.2e-32 142.9 82 85.4
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 1.2e-32 142.9 82 85.4
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 1.2e-32 142.9 82 86.6
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 1.2e-32 142.9 79 89.9
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 1.6e-32 142.5 82 85.4
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 2.8e-32 141.7 82 85.4
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 2.8e-32 141.7 84 83.3
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 3.6e-32 141.4 82 85.4
HPP92_027294 Vanilla planifolia HOM05D002889 ORTHO05D003366 3.6e-32 141.4 82 82.9
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 6.2e-32 140.6 76 90.8
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 6.2e-32 140.6 82 84.1
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 6.2e-32 140.6 82 84.1
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 6.2e-32 140.6 84 86.9
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 8.1e-32 140.2 82 86.6
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 1.8e-31 139.0 83 81.9
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 4.0e-31 137.9 91 78.0
SEGI_17570 Sequoiadendron giganteum HOM05D002889 ORTHO05D003366 4.0e-31 137.9 82 82.9
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 8.9e-31 136.7 82 81.7
EL10Ac7g17766 Beta vulgaris HOM05D002889 ORTHO05D003366 1.2e-30 136.3 112 68.8
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 1.2e-30 136.3 80 85.0
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 1.5e-30 136.0 81 84.0
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 1.5e-30 136.0 80 83.8
vmacro14772 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 4.4e-30 134.4 75 89.3
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 7.5e-30 133.7 76 86.8
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.3e-29 132.9 77 84.4
CDE09G0034 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 3.7e-29 131.3 75 84.0
Thecc.04G215400 Theobroma cacao HOM05D002889 ORTHO05D003366 3.7e-29 131.3 81 77.8
CDE02G1653 Ceratophyllum demersum HOM05D002889 ORTHO05D002017 4.9e-29 131.0 74 87.8
Duzib212G0822 Durio zibethinus HOM05D002889 ORTHO05D003366 4.9e-29 131.0 81 76.5
CDE08G0296 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 8.3e-29 130.2 73 89.0
Gohir.D09G053074 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.1e-28 129.8 81 77.8
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 1.1e-28 129.8 111 64.0
Gohir.A09G053900 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.4e-28 127.5 81 76.5
Gorai.006G054600 Gossypium raimondii HOM05D002889 ORTHO05D003366 7.1e-28 127.1 81 76.5
SMO358G0024 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 7.1e-28 127.1 74 85.1
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 3.0e-26 121.7 62 96.8
SMO271G0072 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 6.6e-26 120.6 77 76.6
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 5.6e-25 117.5 77 75.3
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 5.6e-25 117.5 117 59.8
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 7.3e-25 117.1 82 75.6
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 7.3e-25 117.1 83 69.9
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 4.7e-24 114.4 62 91.9
AagrBONN_evm.TU.Sc2ySwM_344.3269 Anthoceros agrestis HOM05D002889 ORTHO05D003366 8.1e-24 113.6 76 72.4
Os02g0816300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 1.9e-17 92.4 73 64.4
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 5.6e-17 90.9 52 86.5
CBR_g12856 Chara braunii HOM05D002889 ORTHO05D003366 2.1e-16 89.0 75 57.3
Zm00001eb258850 Zea mays HOM05D002889 ORTHO05D003366 3.6e-16 88.2 75 56.0
BcaC05g29830 Brassica carinata HOM05D002889 ORTHO05D012790 8.1e-16 87.0 45 88.9
C05p60400 Brassica napus HOM05D010738 ORTHO05D012790 1.4e-15 86.3 43 93.0
BolC5t34686H Brassica oleracea HOM05D010738 ORTHO05D012790 1.4e-15 86.3 43 93.0
CBR_g8665 Chara braunii HOM05D002889 ORTHO05D003366 5.2e-15 84.3 73 56.2
PRCOL_00006275 Prasinoderma coloniale HOM05D002889 ORTHO05D003366 2.7e-11 72.0 68 50.0
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 3.3e-09 65.1 83 47.0
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 9.6e-09 63.5 31 96.8
MCO10G388 Micromonas commoda HOM05D002889 ORTHO05D003366 9.6e-09 63.5 68 48.5
Lsat_1_v5_gn_9_11241 Lactuca sativa HOM05D002889 ORTHO05D003366 9.0e-07 57.0 31 83.9
COL.COLO4_05728 Corchorus olitorius HOM05D002889 ORTHO05D003366 2.0e-06 55.8 31 80.6
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 3.4e-06 55.1 35 74.3


User provided reference genes

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