Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 7.6e-121 437.2 223 100.0
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 3.3e-92 342.0 238 72.7
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 7.2e-87 324.3 230 70.4
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.2e-81 307.0 219 70.8
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 4.5e-81 305.1 240 64.6
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 1.3e-80 303.5 240 62.5
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.3e-80 303.5 238 63.0
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 2.9e-80 302.4 238 64.3
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 5.0e-80 301.6 238 63.4
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 6.5e-80 301.2 240 62.5
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 6.5e-80 301.2 238 64.3
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 6.5e-80 301.2 239 63.2
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 1.5e-79 300.1 249 61.4
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.5e-79 300.1 238 62.2
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.5e-79 300.1 240 63.8
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 2.5e-79 299.3 240 62.1
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 5.5e-79 298.1 249 60.6
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 7.2e-79 297.7 241 61.4
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 7.2e-79 297.7 241 62.7
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 9.4e-79 297.4 215 69.8
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 9.4e-79 297.4 240 62.5
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.6e-78 296.6 246 61.8
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 1.6e-78 296.6 239 62.8
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 1.6e-78 296.6 244 61.1
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 2.1e-78 296.2 238 62.6
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 2.1e-78 296.2 238 63.0
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 3.6e-78 295.4 238 63.0
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 3.6e-78 295.4 238 63.4
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 3.6e-78 295.4 238 62.6
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 4.7e-78 295.0 238 60.1
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 8.0e-78 294.3 241 61.4
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 1.0e-77 293.9 246 61.0
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 1.0e-77 293.9 238 62.2
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 1.4e-77 293.5 245 60.8
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 2.3e-77 292.7 238 62.2
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 3.0e-77 292.4 238 61.3
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 3.0e-77 292.4 241 61.8
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 4.0e-77 292.0 244 61.5
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 4.0e-77 292.0 238 60.5
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 4.0e-77 292.0 239 62.3
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 5.2e-77 291.6 239 60.7
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 6.8e-77 291.2 238 62.2
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 8.8e-77 290.8 238 61.3
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 1.2e-76 290.4 244 60.7
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 1.2e-76 290.4 238 62.2
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 1.2e-76 290.4 238 60.1
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.5e-76 290.0 238 60.9
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 1.5e-76 290.0 238 61.3
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.6e-76 289.3 240 60.8
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 4.4e-76 288.5 238 60.1
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 4.4e-76 288.5 238 60.1
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 9.8e-76 287.3 238 59.7
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 9.8e-76 287.3 238 60.1
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 9.8e-76 287.3 238 60.1
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 9.8e-76 287.3 238 59.7
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 1.3e-75 287.0 238 60.1
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.7e-75 286.6 238 60.9
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 2.2e-75 286.2 232 63.4
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 2.2e-75 286.2 238 60.5
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 3.7e-75 285.4 238 60.5
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 4.9e-75 285.0 238 56.7
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 1.4e-74 283.5 238 60.5
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 1.4e-74 283.5 238 59.2
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 1.8e-74 283.1 238 59.7
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 5.4e-74 281.6 240 58.8
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 5.4e-74 281.6 238 58.4
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 7.0e-74 281.2 238 59.7
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 9.2e-74 280.8 230 60.4
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 9.2e-74 280.8 238 59.2
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 9.2e-74 280.8 238 59.7
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.0e-73 279.6 238 59.2
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.5e-73 278.5 238 58.0
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 5.9e-73 278.1 238 58.4
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 7.7e-73 277.7 238 59.2
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 1.3e-72 276.9 242 57.9
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 1.7e-72 276.6 238 57.6
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 2.9e-72 275.8 238 57.1
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 8.6e-72 274.2 230 60.4
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 2.5e-71 272.7 230 60.0
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 1.2e-70 270.4 230 60.0
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.8e-69 266.5 230 57.8
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 2.3e-69 266.2 216 61.1
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 2.0e-68 263.1 294 50.7
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 7.5e-68 261.2 216 59.7
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 2.2e-67 259.6 207 64.7
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 4.9e-67 258.5 218 60.6
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 6.4e-67 258.1 218 59.2
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.4e-66 256.9 216 60.6
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.4e-66 256.1 238 53.8
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 2.3e-64 249.6 215 58.6
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 8.6e-64 247.7 245 51.4
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 7.3e-63 244.6 219 57.1
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 2.6e-60 236.1 236 50.0
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 2.6e-60 236.1 199 59.3
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 9.8e-60 234.2 237 50.2
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.3e-59 233.8 243 51.9
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.9e-58 229.9 198 59.6
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 9.5e-55 217.6 238 47.5
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 1.3e-51 207.2 183 59.6
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 6.4e-51 204.9 181 56.4
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 2.3e-48 196.4 144 66.0
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 2.6e-44 183.0 230 46.1
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.7e-40 170.2 202 44.6
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 6.9e-37 158.3 111 68.5
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 9.3e-34 147.9 105 67.6
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 9.9e-28 127.9 131 49.6
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 9.9e-28 127.9 222 37.8
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 2.4e-26 123.2 89 65.2
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 1.2e-25 120.9 243 32.9
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 3.5e-25 119.4 250 33.2
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 5.6e-23 112.1 127 44.9
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 1.3e-16 90.9 193 30.6
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 7.6e-12 75.1 113 36.3
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.3e-11 74.3 96 40.6
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.1e-10 71.2 189 28.6
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.4e-10 70.9 92 42.4
Zm00001eb257390 Zea mays HOM05D002462 ORTHO05D002893 9.3e-10 68.2 127 32.3
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.6e-09 67.4 109 35.8
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.6e-09 67.4 109 35.8
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 4.6e-09 65.9 115 36.5
Zm00001eb375820 Zea mays HOM05D000163 ORTHO05D002893 4.6e-09 65.9 124 33.1
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 6.0e-09 65.5 110 37.3
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 7.9e-09 65.1 109 34.9
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.3e-08 64.3 109 35.8
AagrBONN_evm.TU.Sc2ySwM_117.1559 Anthoceros agrestis HOM05D002042 ORTHO05D019658 2.3e-08 63.5 116 37.9
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 2.3e-08 63.5 119 36.1
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 2.3e-08 63.5 139 30.2
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 3.0e-08 63.2 174 30.5
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 5.1e-08 62.4 119 36.1
Phvul.007G277400 Phaseolus vulgaris HOM05D006451 ORTHO05D007680 6.7e-08 62.0 119 36.1
VMungo0720G2899 Vigna mungo HOM05D006451 ORTHO05D007680 6.7e-08 62.0 116 36.2
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 8.7e-08 61.6 109 34.9
TPR.G25159 Trifolium pratense HOM05D006451 ORTHO05D007680 8.7e-08 61.6 115 35.7
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 1.1e-07 61.2 151 33.8
TAR375G0572 Trochodendron aralioides HOM05D002462 ORTHO05D002893 2.5e-07 60.1 127 31.5
Psat6g104120 Pisum sativum HOM05D006451 ORTHO05D007680 3.3e-07 59.7 115 34.8
Ca_12151_v3 Cicer arietinum L. HOM05D006451 ORTHO05D007680 5.7e-07 58.9 110 35.5
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 5.7e-07 58.9 116 36.2
Medtr1g041435 Medicago truncatula HOM05D006451 ORTHO05D007680 9.6e-07 58.2 115 33.9
arahy.Tifrunner.gnm1.ann1.1SA9RR Arachis hypogaea HOM05D006451 ORTHO05D007680 1.6e-06 57.4 115 34.8
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 2.8e-06 56.6 117 32.5
Ca_03995_v3 Cicer arietinum L. HOM05D000868 ORTHO05D000711 2.8e-06 56.6 116 37.1
Sc05g0002640 Simmondsia chinensis HOM05D006210 ORTHO05D007510 2.8e-06 56.6 35 80.0
RcHm_v2.0_Chr4g0388861 Rosa chinensis HOM05D002462 ORTHO05D002893 3.7e-06 56.2 146 32.2
SEGI_18907 Sequoiadendron giganteum HOM05D002462 ORTHO05D002893 8.2e-06 55.1 127 30.7


User provided reference genes

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