Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.9e-240 835.5 440 100.0
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 2.7e-162 575.9 438 74.4
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.5e-160 570.1 438 74.2
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.6e-159 566.6 435 74.0
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 2.4e-142 509.6 413 69.5
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.0e-140 504.2 435 65.1
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.2e-140 503.1 430 66.5
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 9.7e-136 487.6 430 65.8
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 2.2e-135 486.5 433 63.3
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 2.8e-135 486.1 434 65.0
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.1e-134 484.2 426 64.8
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.1e-134 482.6 442 63.6
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 4.1e-134 482.3 433 63.3
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.2e-133 480.7 434 63.6
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.6e-133 480.3 428 64.0
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.6e-133 479.6 389 68.6
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 3.5e-133 479.2 436 62.6
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 4.5e-133 478.8 406 66.3
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 5.9e-133 478.4 424 63.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 7.7e-133 478.0 423 65.0
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 7.7e-133 478.0 416 65.1
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.0e-132 477.6 426 65.0
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.7e-132 476.9 429 64.3
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 2.9e-132 476.1 423 63.4
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 3.8e-132 475.7 402 66.7
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.9e-131 473.4 424 62.7
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 2.5e-131 473.0 416 64.9
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 4.2e-131 472.2 434 63.6
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 4.2e-131 472.2 428 64.0
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 4.2e-131 472.2 425 63.8
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 9.4e-131 471.1 410 64.6
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 9.4e-131 471.1 428 61.4
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.2e-130 470.7 423 62.2
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 2.7e-130 469.5 426 62.7
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 3.6e-130 469.2 426 62.9
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 3.6e-130 469.2 399 67.2
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 6.1e-130 468.4 399 65.7
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.0e-129 467.6 403 65.3
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.0e-129 467.6 433 61.2
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.0e-129 467.6 435 63.9
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.8e-129 466.8 428 63.3
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.8e-129 466.8 432 63.4
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.8e-129 466.8 432 62.5
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.8e-129 466.8 440 60.5
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.8e-129 466.8 399 66.7
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 2.3e-129 466.5 437 62.2
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 2.3e-129 466.5 407 64.4
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 3.0e-129 466.1 420 63.3
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.0e-129 466.1 432 63.2
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 3.0e-129 466.1 432 63.4
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 3.0e-129 466.1 432 63.2
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 3.0e-129 466.1 401 65.6
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 5.2e-129 465.3 432 60.6
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 5.2e-129 465.3 432 63.0
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 8.8e-129 464.5 399 65.2
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 8.8e-129 464.5 418 63.2
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 2.0e-128 463.4 435 62.1
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.0e-128 463.4 432 62.7
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 2.6e-128 463.0 435 62.1
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.6e-128 463.0 425 63.1
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 2.6e-128 463.0 431 63.1
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 4.4e-128 462.2 435 62.3
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 5.7e-128 461.8 401 64.8
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 7.5e-128 461.5 429 62.7
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 9.7e-128 461.1 437 62.0
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 9.7e-128 461.1 437 62.0
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 9.7e-128 461.1 388 67.3
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 9.7e-128 461.1 403 65.5
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 9.7e-128 461.1 431 62.4
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-127 460.7 436 61.9
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.7e-127 460.3 434 61.8
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.7e-127 460.3 434 59.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 2.2e-127 459.9 426 63.4
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 2.8e-127 459.5 432 61.1
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.1e-126 457.6 429 60.8
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.8e-126 456.8 431 60.6
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 4.1e-126 455.7 419 61.3
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 4.1e-126 455.7 451 60.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.1e-126 455.7 423 62.9
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 4.1e-126 455.7 395 65.8
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 5.3e-126 455.3 399 64.9
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 7.0e-126 454.9 401 63.6
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.2e-125 454.1 427 61.8
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.0e-125 453.4 397 65.2
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 2.7e-125 453.0 431 60.8
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.9e-125 451.8 384 65.9
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 7.7e-125 451.4 419 61.6
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 2.2e-124 449.9 397 64.7
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 5.0e-124 448.7 397 64.2
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 9.4e-123 444.5 403 62.5
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 2.7e-122 443.0 395 64.1
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.4e-121 440.7 427 59.7
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 3.4e-120 436.0 444 58.1
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.2e-119 433.3 373 66.5
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 5.4e-118 428.7 505 53.5
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.2e-117 427.6 395 63.0
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 4.5e-117 425.6 370 65.9
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 6.6e-116 421.8 363 67.2
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.1e-115 421.0 415 59.5
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.0e-113 414.5 364 65.1
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 8.9e-113 411.4 407 59.5
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 3.7e-111 406.0 400 58.2
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.4e-110 404.1 387 58.4
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 1.6e-106 390.6 358 62.8
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 8.3e-103 378.3 387 56.8
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.3e-99 366.3 373 58.7
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 2.3e-97 360.1 394 53.6
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 5.2e-97 359.0 350 58.3
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 9.2e-94 348.2 292 65.8
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.4e-89 334.3 407 50.6
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 3.5e-77 293.1 225 69.3
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 3.3e-75 286.6 324 54.0
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.2e-74 282.3 221 68.8
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 8.1e-74 282.0 442 46.6
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.1e-73 281.6 400 46.0
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 6.9e-73 278.9 392 47.4
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 9.9e-72 275.0 294 54.8
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 2.2e-71 273.9 372 48.1
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.3e-52 211.5 237 54.9
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 8.5e-31 139.0 188 47.9
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.1e-30 138.7 185 48.6
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.4e-30 138.3 138 58.0
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 7.2e-30 136.0 396 32.1
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.1e-29 134.4 90 81.1
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 7.9e-29 132.5 124 60.5
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.7e-28 129.4 105 71.4
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 2.2e-26 124.4 103 62.1
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.2e-26 124.4 82 80.5
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 5.9e-24 116.3 106 63.2
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.6e-21 107.1 218 39.4
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.5e-19 101.7 81 69.1
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.5e-19 101.7 81 69.1
EL10Ac8g18739 Beta vulgaris HOM05D004269 ORTHO05D021565 1.8e-17 94.7 50 88.0
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 7.2e-14 82.8 71 64.8
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 9.4e-14 82.4 91 54.9
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 2.1e-13 81.3 47 89.4
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 4.7e-13 80.1 211 34.6
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 5.2e-12 76.6 131 41.2
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 8.8e-12 75.9 77 55.8
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 2.6e-11 74.3 64 60.9
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 4.4e-11 73.6 123 44.7
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 4.4e-11 73.6 77 55.8
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 9.8e-11 72.4 115 44.3
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 9.8e-11 72.4 185 34.6
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.2e-10 71.2 59 67.8
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 2.2e-10 71.2 59 67.8
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 2.2e-10 71.2 59 67.8
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 2.2e-10 71.2 59 67.8
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 2.2e-10 71.2 59 67.8
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 2.2e-10 71.2 59 67.8
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 2.8e-10 70.9 55 67.3
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 4.8e-10 70.1 68 58.8
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 6.3e-10 69.7 55 67.3
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 7.0e-09 66.2 91 45.1
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 4.5e-08 63.5 61 63.9
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 2.2e-07 61.2 62 56.5
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 8.5e-07 59.3 45 66.7
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 2.5e-06 57.8 39 71.8
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 4.2e-06 57.0 42 69.0


User provided reference genes

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