Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 4.5e-135 484.6 243 100.0
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.3e-94 350.1 241 73.0
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.9e-93 346.3 244 73.0
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.6e-92 342.0 244 73.0
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.1e-85 320.5 242 65.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.6e-84 316.6 241 66.4
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 8.1e-84 314.3 241 67.6
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 2.4e-83 312.8 243 64.2
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.2e-82 310.5 243 66.3
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 2.2e-81 306.2 252 63.1
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 6.4e-81 304.7 242 62.4
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 3.2e-80 302.4 241 63.5
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.5e-80 301.6 247 61.9
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 2.1e-79 299.7 246 63.4
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 3.5e-79 298.9 241 63.5
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.0e-78 297.4 241 62.2
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.0e-78 297.4 242 61.2
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.0e-78 295.8 241 62.2
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 3.9e-78 295.4 241 62.2
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 6.7e-78 294.7 241 63.5
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.1e-77 293.9 242 62.8
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.1e-77 293.9 249 63.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 1.5e-77 293.5 243 60.9
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.9e-77 293.1 239 62.3
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.9e-77 293.1 247 59.9
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.9e-77 293.1 241 63.1
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.9e-77 293.1 249 60.2
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.5e-77 292.7 241 61.8
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.5e-77 292.7 242 62.4
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 3.3e-77 292.4 240 61.7
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 3.3e-77 292.4 251 60.6
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 4.3e-77 292.0 241 61.0
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.6e-77 291.6 242 63.6
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 9.6e-77 290.8 245 58.4
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 9.6e-77 290.8 241 61.0
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.3e-76 290.4 240 61.2
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.3e-76 290.4 239 61.9
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.3e-76 290.4 241 62.7
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.1e-76 289.7 251 61.0
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.8e-76 289.3 239 61.5
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 2.8e-76 289.3 241 59.8
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.7e-76 288.9 246 61.0
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.7e-76 288.9 246 61.0
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 3.7e-76 288.9 249 62.7
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.7e-76 288.9 263 58.2
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 4.8e-76 288.5 262 59.5
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 8.2e-76 287.7 241 60.2
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.1e-75 287.3 244 60.2
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-75 287.3 241 61.8
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.1e-75 287.3 241 62.2
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.4e-75 287.0 212 65.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.4e-75 287.0 241 62.2
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.8e-75 286.6 241 60.6
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 2.4e-75 286.2 209 67.9
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 2.4e-75 286.2 244 62.3
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.4e-75 286.2 241 61.4
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.1e-75 285.8 249 61.0
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 3.1e-75 285.8 246 58.5
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 4.0e-75 285.4 241 61.0
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 5.3e-75 285.0 265 57.0
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 5.3e-75 285.0 179 76.0
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 6.9e-75 284.6 243 61.3
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 2.0e-74 283.1 180 75.0
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 2.6e-74 282.7 249 60.2
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.6e-74 282.7 195 70.8
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 5.8e-74 281.6 243 60.9
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 5.8e-74 281.6 245 61.2
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.0e-73 280.8 244 60.7
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.7e-73 280.0 242 61.6
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.7e-73 280.0 247 60.7
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.7e-73 280.0 241 58.9
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.2e-73 279.6 246 60.6
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 2.2e-73 279.6 242 59.5
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.9e-73 279.3 242 60.7
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.9e-73 278.5 247 59.9
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 4.9e-73 278.5 281 55.9
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.5e-73 278.1 241 60.6
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-72 277.3 243 60.5
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.1e-72 277.3 245 59.2
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.5e-72 276.2 247 58.3
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-71 273.9 241 56.8
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 2.1e-71 273.1 241 59.3
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.7e-71 272.7 241 57.7
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.7e-71 272.7 241 57.7
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 2.7e-71 272.7 244 56.6
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 6.1e-71 271.6 241 57.7
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.9e-71 271.2 247 56.7
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.9e-71 271.2 217 63.1
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 6.7e-70 268.1 242 56.6
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.9e-69 266.5 197 64.0
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.5e-69 266.2 243 58.4
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 5.7e-69 265.0 254 54.7
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.2e-68 261.2 261 55.6
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.9e-65 252.7 243 53.5
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.8e-65 252.3 249 53.4
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 1.1e-64 250.8 164 73.2
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 3.2e-64 249.2 165 69.7
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 9.4e-64 247.7 246 52.0
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 2.7e-63 246.1 341 44.3
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.0e-62 244.2 210 61.4
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.5e-61 240.4 201 60.2
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 2.8e-60 236.1 242 52.9
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.8e-60 236.1 217 59.9
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.1e-59 234.2 253 53.8
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.4e-58 229.2 172 66.9
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.0e-57 227.6 192 59.9
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.7e-57 226.9 242 52.5
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 4.2e-56 222.2 227 52.4
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 2.1e-55 219.9 178 61.2
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.1e-55 219.9 246 50.8
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 4.7e-55 218.8 210 54.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 3.9e-54 215.7 237 51.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.0e-53 213.4 163 65.6
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 2.6e-53 213.0 162 63.6
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.2e-49 199.9 246 45.9
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 5.0e-49 198.7 139 65.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.5e-48 197.2 196 55.1
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.5e-48 197.2 178 56.7
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.2e-47 194.1 211 52.6
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.4e-46 190.7 236 44.1
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.8e-46 190.3 178 57.9
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 2.3e-46 189.9 146 65.1
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 3.9e-46 189.1 175 52.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.1e-45 187.6 184 53.8
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 4.0e-38 162.5 167 50.9
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.2e-37 161.0 111 70.3
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 2.0e-37 160.2 154 53.9
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 3.7e-36 156.0 152 57.2
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 2.7e-34 149.8 188 46.8
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 5.9e-34 148.7 158 53.8
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.2e-31 141.0 94 67.0
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.1e-31 140.2 181 42.0
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.1e-31 140.2 149 51.7
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.4e-30 137.5 176 45.5
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.3e-30 136.7 125 52.8
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.2e-30 135.6 94 69.1
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 4.1e-27 125.9 112 55.4
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 2.0e-26 123.6 112 53.6
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 8.6e-25 118.2 124 49.2
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.0e-21 107.1 129 46.5
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.0e-21 107.1 129 46.5
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-18 97.8 134 41.8
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.5e-18 96.3 64 65.6
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.7e-17 94.0 61 68.9
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 1.7e-17 94.0 66 63.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 6.1e-15 85.5 61 65.6
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 6.8e-14 82.0 62 61.3
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 8.9e-14 81.6 119 47.1
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.2e-12 77.0 98 53.1
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.9e-12 75.9 96 49.0
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 3.2e-11 73.2 105 41.9
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.7e-10 70.1 52 63.5


User provided reference genes

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