Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 7.9e-214 746.9 389 100.0
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.7e-155 552.0 388 77.8
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.3e-152 543.5 388 76.5
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 2.9e-131 472.6 389 66.3
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 6.6e-112 408.3 396 58.1
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 7.3e-111 404.8 370 59.5
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.4e-109 399.8 394 56.3
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 4.4e-108 395.6 396 56.3
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 6.4e-107 391.7 389 56.3
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 3.5e-105 386.0 393 54.5
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 2.5e-103 379.8 397 53.4
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 4.3e-103 379.0 393 53.7
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 8.1e-102 374.8 387 53.5
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 8.1e-102 374.8 393 51.9
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.0e-100 370.2 384 54.2
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 2.6e-100 369.8 380 53.7
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 4.5e-100 369.0 365 54.5
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 7.6e-100 368.2 387 52.7
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 1.9e-98 363.6 396 51.5
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 3.2e-98 362.8 374 54.8
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 4.2e-98 362.5 374 54.8
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 9.3e-98 361.3 390 53.3
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 2.1e-97 360.1 392 52.3
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 3.5e-97 359.4 374 54.5
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 4.6e-97 359.0 390 53.3
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 7.9e-97 358.2 373 52.3
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.0e-96 357.8 393 53.9
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.8e-96 357.1 370 52.2
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.8e-96 357.1 360 53.6
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 2.3e-96 356.7 396 52.5
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 2.3e-96 356.7 370 52.2
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 2.3e-96 356.7 395 51.4
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.0e-96 356.3 370 51.9
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.0e-96 356.3 370 51.9
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 3.0e-96 356.3 375 51.7
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 3.0e-96 356.3 399 51.6
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 3.9e-96 355.9 375 52.3
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.1e-96 355.5 369 52.3
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 5.1e-96 355.5 390 53.3
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 6.7e-96 355.1 393 49.4
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.1e-95 354.4 419 50.8
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.5e-95 353.2 393 49.1
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 5.6e-95 352.1 396 49.5
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.3e-94 350.9 398 50.5
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.6e-94 350.5 457 46.4
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.1e-94 350.1 370 51.4
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 4.8e-94 349.0 391 50.4
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 1.1e-93 347.8 389 50.4
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 1.1e-93 347.8 395 50.6
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.1e-93 347.8 369 51.2
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.1e-93 347.8 388 49.2
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.4e-93 347.4 392 50.8
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 3.1e-93 346.3 396 49.2
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 5.3e-93 345.5 416 48.6
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 6.9e-93 345.1 372 51.3
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 2.0e-92 343.6 374 52.9
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 2.0e-92 343.6 388 50.0
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 3.4e-92 342.8 369 51.8
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 3.4e-92 342.8 375 51.5
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 5.8e-92 342.0 343 56.0
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 1.3e-91 340.9 368 50.8
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 6.5e-91 338.6 393 47.8
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 8.4e-91 338.2 393 48.9
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.1e-90 337.8 384 51.0
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 1.4e-90 337.4 388 48.7
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.5e-90 336.7 397 48.6
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 2.1e-89 333.6 389 49.4
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 2.1e-89 333.6 373 50.1
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 1.3e-88 330.9 369 48.8
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 1.8e-88 330.5 389 49.4
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 3.0e-88 329.7 347 55.0
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 1.5e-87 327.4 383 46.0
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 7.4e-87 325.1 373 50.4
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.1e-86 323.6 386 46.4
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.8e-86 323.2 374 48.7
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 5.3e-85 318.9 315 57.5
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 6.9e-85 318.5 386 46.1
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 9.0e-85 318.2 372 46.2
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 3.4e-84 316.2 386 45.3
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.5e-84 315.8 390 46.2
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 2.2e-83 313.5 360 47.2
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 1.9e-82 310.5 386 44.6
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 5.5e-82 308.9 372 46.2
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.8e-80 303.9 372 45.4
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.3e-80 303.5 389 44.7
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 1.5e-79 300.8 394 45.7
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 4.3e-79 299.3 401 44.9
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 5.7e-79 298.9 327 51.7
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 5.7e-79 298.9 392 43.9
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 9.7e-79 298.1 362 46.1
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 9.7e-79 298.1 389 43.4
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 4.1e-77 292.7 319 49.2
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.2e-76 291.2 372 45.7
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 1.0e-75 288.1 317 51.4
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.7e-75 287.3 370 43.8
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 2.9e-75 286.6 389 41.4
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 6.5e-75 285.4 398 44.7
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 6.5e-75 285.4 395 44.1
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 1.9e-74 283.9 389 41.1
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 5.5e-74 282.3 313 51.8
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.2e-73 281.2 388 42.0
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 3.6e-73 279.6 372 42.7
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 2.2e-70 270.4 284 52.8
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.4e-69 267.7 372 41.9
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 5.3e-69 265.8 359 44.0
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 6.9e-69 265.4 305 47.2
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.5e-68 264.2 366 41.5
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 2.6e-68 263.5 290 50.7
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 4.5e-68 262.7 355 43.9
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 4.5e-68 262.7 380 42.1
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.7e-67 260.8 364 40.4
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 6.7e-64 248.8 388 40.5
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.1e-63 248.1 394 39.3
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.4e-61 241.1 360 38.6
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 4.5e-60 236.1 279 46.2
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.1e-58 231.5 361 38.2
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 4.7e-57 226.1 370 37.0
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 8.2e-54 215.3 247 49.0
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 3.5e-52 209.9 368 39.1
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.9e-50 204.1 252 47.6
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.2e-50 203.0 250 46.4
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 4.2e-50 203.0 392 35.7
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 9.4e-50 201.8 235 49.4
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 2.0e-47 194.1 206 50.0
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 3.5e-44 183.3 296 41.2
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 3.5e-44 183.3 148 66.2
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 5.2e-40 169.5 258 44.6
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 2.8e-38 163.7 323 35.9
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 3.1e-37 160.2 321 36.4
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.2e-36 158.3 376 30.3
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.8e-32 144.4 442 26.5
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 2.0e-28 131.0 184 40.2
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 8.0e-25 119.0 172 47.7
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 2.3e-24 117.5 146 42.5
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 2.4e-21 107.5 262 32.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.8e-17 94.0 184 33.2
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 9.8e-15 85.5 219 31.1
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 3.2e-13 80.5 84 51.2
PGR142G1573 Punica granatum HOM05D005473 ORTHO05D006543 1.3e-11 75.1 244 29.1
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 2.3e-11 74.3 206 27.2
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 2.1e-09 67.8 55 56.4
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 4.7e-09 66.6 59 50.8
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 2.9e-06 57.4 112 37.5


User provided reference genes

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