Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac6g14196 Beta vulgaris HOM05D014981 ORTHO05D017491 4.8e-109 397.9 208 100.0
EL10Ac7g17113 Beta vulgaris HOM05D000034 ORTHO05D000277 1.3e-85 320.1 247 70.9
EL10Ac1g00510 Beta vulgaris HOM05D000034 ORTHO05D000277 4.1e-84 315.1 247 73.7
Ah.08g221600 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.9e-57 226.5 243 51.4
EL10Ac3g05873 Beta vulgaris HOM05D000034 ORTHO05D000277 1.6e-56 223.4 253 51.8
AUR62034137 Chenopodium quinoa HOM05D014981 ORTHO05D017491 2.3e-47 193.0 173 59.5
EL10Ac9g21844 Beta vulgaris HOM05D001651 ORTHO05D000277 8.6e-34 147.9 195 45.6
Ah.08g223780 Amaranthus hybridus HOM05D000034 ORTHO05D000277 9.5e-33 144.4 146 56.2
DCAR_009785 Daucus carota HOM05D001651 ORTHO05D000277 4.2e-28 129.0 248 35.1
DCAR_015799 Daucus carota HOM05D001651 ORTHO05D000277 4.2e-28 129.0 248 35.1
DCAR_018898 Daucus carota HOM05D001651 ORTHO05D000277 3.9e-26 122.5 248 33.9
Atru.chr2.3198 Acer truncatum HOM05D001651 ORTHO05D000277 4.2e-20 102.4 252 31.3
Atru.chr12.953 Acer truncatum HOM05D001651 ORTHO05D000277 9.3e-20 101.3 252 31.3
AUR62035422 Chenopodium quinoa HOM05D001651 ORTHO05D000277 3.0e-18 96.3 141 44.0
CANSAT64G1414 Cannabis sativa HOM05D001651 ORTHO05D000277 1.6e-16 90.5 247 27.9
CANSAT80G1436 Cannabis sativa HOM05D001651 ORTHO05D000277 2.8e-16 89.7 250 28.4
arahy.Tifrunner.gnm1.ann1.5U3795 Arachis hypogaea HOM05D001651 ORTHO05D000277 3.1e-15 86.3 132 40.9
arahy.Tifrunner.gnm1.ann1.0QZ25Z Arachis hypogaea HOM05D001651 ORTHO05D000277 2.6e-14 83.2 251 31.9
Ah.02g120430 Amaranthus hybridus HOM05D002662 ORTHO05D002957 2.9e-13 79.7 87 52.9
CANSAT56G0820 Cannabis sativa HOM05D001651 ORTHO05D000277 4.9e-13 79.0 257 27.6
Medtr3g075160 Medicago truncatula HOM05D000034 ORTHO05D000277 4.9e-13 79.0 254 26.0
arahy.Tifrunner.gnm1.ann1.LUU7A8 Arachis hypogaea HOM05D001651 ORTHO05D000277 8.4e-13 78.2 262 30.2
Psat5g244200 Pisum sativum HOM05D000034 ORTHO05D000277 8.4e-13 78.2 249 28.5
arahy.Tifrunner.gnm1.ann1.E2D6CJ Arachis hypogaea HOM05D001651 ORTHO05D000277 2.4e-12 76.6 262 30.2
arahy.Tifrunner.gnm1.ann1.VKU54N Arachis hypogaea HOM05D001651 ORTHO05D000277 4.2e-12 75.9 264 29.2
arahy.Tifrunner.gnm1.ann1.Q82TWL Arachis hypogaea HOM05D001651 ORTHO05D000277 5.4e-12 75.5 263 29.7
arahy.Tifrunner.gnm1.ann1.3RQC98 Arachis hypogaea HOM05D001651 ORTHO05D000277 7.1e-12 75.1 257 30.0
AUR62035709 Chenopodium quinoa HOM05D001651 ORTHO05D000277 9.3e-12 74.7 129 40.3
Medtr0697s0010 Medicago truncatula HOM05D000034 ORTHO05D000277 2.1e-11 73.6 244 26.6
DCAR_011368 Daucus carota HOM05D001651 ORTHO05D000277 4.6e-11 72.4 148 34.5
DCAR_011369 Daucus carota HOM05D001651 ORTHO05D000277 4.6e-11 72.4 148 34.5
arahy.Tifrunner.gnm1.ann1.4HXN36 Arachis hypogaea HOM05D001651 ORTHO05D000277 7.9e-11 71.6 247 30.0
Lj1g0022147 Lotus japonicus HOM05D000034 ORTHO05D000277 1.3e-10 70.9 251 26.7
MELO3C030820.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.8e-10 70.5 94 38.3
Prupe.4G257700 Prunus persica HOM05D000034 ORTHO05D000277 2.3e-10 70.1 176 31.8
COL.COLO4_35990 Corchorus olitorius HOM05D011723 ORTHO05D000277 3.0e-10 69.7 237 26.6
COL.COLO4_36116 Corchorus olitorius HOM05D011723 ORTHO05D000277 3.0e-10 69.7 210 25.7
Atru.chr6.37 Acer truncatum HOM05D000034 ORTHO05D000037 3.9e-10 69.3 257 26.5
arahy.Tifrunner.gnm1.ann1.PCHE3H Arachis hypogaea HOM05D001651 ORTHO05D000277 6.7e-10 68.6 131 34.4
COL.COLO4_22924 Corchorus olitorius HOM05D011723 ORTHO05D000277 8.7e-10 68.2 266 26.3
Hma1.2p1_2091F.1_g313860 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 8.7e-10 68.2 250 27.2
Psat5g272440 Pisum sativum HOM05D000034 ORTHO05D000037 8.7e-10 68.2 242 26.9
PGR031G0918 Punica granatum HOM05D000034 ORTHO05D000277 8.7e-10 68.2 172 31.4
PGR044G2465 Punica granatum HOM05D000034 ORTHO05D000277 8.7e-10 68.2 185 31.9
Thecc.09G268100 Theobroma cacao HOM05D000034 ORTHO05D000277 1.1e-09 67.8 144 32.6
COL.COLO4_16328 Corchorus olitorius HOM05D011723 ORTHO05D000277 1.5e-09 67.4 215 26.5
MELO3C032494.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.9e-09 67.0 94 37.2
MELO3C032795.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.9e-09 67.0 118 33.1
Thecc.05G132700 Theobroma cacao HOM05D001651 ORTHO05D000277 1.9e-09 67.0 262 27.1
arahy.Tifrunner.gnm1.ann1.FE068N Arachis hypogaea HOM05D001651 ORTHO05D000277 2.5e-09 66.6 244 27.9
ECA246G1567 Erigeron canadensis HOM05D000034 ORTHO05D000277 2.5e-09 66.6 148 29.1
Hma1.2p1_0232F.1_g097920 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.3e-09 66.2 192 29.7
Rhsim05G0015700 Rhododendron simsii HOM05D000034 ORTHO05D000277 3.3e-09 66.2 233 29.2
Rhsim03G0059900 Rhododendron simsii HOM05D000034 ORTHO05D000037 4.3e-09 65.9 233 28.8
RcHm_v2.0_Chr6g0284621 Rosa chinensis HOM05D000034 ORTHO05D000277 7.4e-09 65.1 246 27.2
PGR142G3888 Punica granatum HOM05D000034 ORTHO05D000277 9.6e-09 64.7 164 32.3
Rhsim01G0279200 Rhododendron simsii HOM05D000034 ORTHO05D000037 9.6e-09 64.7 233 28.8
Sed0005563 Sechium edule HOM05D001651 ORTHO05D000277 9.6e-09 64.7 183 27.3
Hma1.2p1_0170F.1_g074960 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.3e-08 64.3 250 26.4
Hma1.2p1_1104F.1_g257520 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.3e-08 64.3 251 27.1
COL.COLO4_20956 Corchorus olitorius HOM05D011723 ORTHO05D000277 1.6e-08 63.9 216 27.3
MELO3C029855.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.6e-08 63.9 123 30.9
Thecc.01G257300 Theobroma cacao HOM05D000034 ORTHO05D000277 1.6e-08 63.9 144 33.3
RcHm_v2.0_Chr1g0343671 Rosa chinensis HOM05D000034 ORTHO05D000277 2.1e-08 63.5 247 29.1
arahy.Tifrunner.gnm1.ann1.ZKDC23 Arachis hypogaea HOM05D001651 ORTHO05D000277 3.7e-08 62.8 262 28.2
GSVIVG01022336001 Vitis vinifera HOM05D000034 ORTHO05D000277 3.7e-08 62.8 245 24.1
CSS0033959 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.8e-08 62.4 55 54.5
PGR042G3686 Punica granatum HOM05D000034 ORTHO05D000277 4.8e-08 62.4 183 30.6
EL10Ac5g11589 Beta vulgaris HOM05D000034 ORTHO05D000037 6.2e-08 62.0 114 34.2
CSS0036595 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 6.2e-08 62.0 202 26.2
Hma1.2p1_0386F.1_g141750 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 6.2e-08 62.0 251 26.3
Hma1.2p1_0744F.1_g211850 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 6.2e-08 62.0 251 26.3
RcHm_v2.0_Chr5g0072391 Rosa chinensis HOM05D000034 ORTHO05D000277 6.2e-08 62.0 56 55.4
Nn1g01000 Nelumbo nucifera HOM05D001651 ORTHO05D000277 8.1e-08 61.6 204 27.5
CANSAT01G2074 Cannabis sativa HOM05D000034 ORTHO05D000277 1.8e-07 60.5 218 27.5
Sed0003532 Sechium edule HOM05D001651 ORTHO05D000277 1.8e-07 60.5 141 28.4
Sed0005350 Sechium edule HOM05D001651 ORTHO05D000277 1.8e-07 60.5 135 28.1
FAN26G1288 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.4e-07 60.1 246 26.4
MELO3C027794.2 Cucumis melo HOM05D001651 ORTHO05D000277 3.1e-07 59.7 79 40.5
CANSAT56G2768 Cannabis sativa HOM05D008011 ORTHO05D000277 4.0e-07 59.3 250 23.2
MELO3C028435.2 Cucumis melo HOM05D001651 ORTHO05D000277 4.0e-07 59.3 137 27.7
MELO3C032180.2 Cucumis melo HOM05D001651 ORTHO05D000277 4.0e-07 59.3 127 29.9
Dinv19761 Davidia involucrata HOM05D000034 ORTHO05D000277 4.0e-07 59.3 222 27.9
arahy.Tifrunner.gnm1.ann1.C6IU4G Arachis hypogaea HOM05D001651 ORTHO05D000277 5.3e-07 58.9 202 24.3
arahy.Tifrunner.gnm1.ann1.D661VL Arachis hypogaea HOM05D001651 ORTHO05D000277 5.3e-07 58.9 114 34.2
MELO3C027597.2 Cucumis melo HOM05D001651 ORTHO05D000277 5.3e-07 58.9 125 30.4
AUR62006211 Chenopodium quinoa HOM05D000034 ORTHO05D000277 6.9e-07 58.5 92 38.0
HanXRQChr10g0300111 Helianthus annuus HOM05D000034 ORTHO05D000277 6.9e-07 58.5 253 29.6
arahy.Tifrunner.gnm1.ann1.7ADW8G Arachis hypogaea HOM05D001651 ORTHO05D000277 9.0e-07 58.2 262 27.9
COL.COLO4_07669 Corchorus olitorius HOM05D000034 ORTHO05D000277 9.0e-07 58.2 256 23.0
MELO3C032758.2 Cucumis melo HOM05D001651 ORTHO05D000277 9.0e-07 58.2 143 31.5
AUR62025908 Chenopodium quinoa HOM05D000034 ORTHO05D000277 1.2e-06 57.8 229 23.6
TWI34G1435 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 1.2e-06 57.8 142 29.6
CSS0033072 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.5e-06 57.4 221 25.8
CSS0040966 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.5e-06 57.4 51 52.9
MELO3C035126.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.5e-06 57.4 143 26.6
DCAR_008556 Daucus carota HOM05D003075 ORTHO05D003430 1.5e-06 57.4 38 63.2
FAN15G3570 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.5e-06 57.4 56 53.6
PGR044G1696 Punica granatum HOM05D000034 ORTHO05D000277 1.5e-06 57.4 175 31.4
CSS0024362 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.0e-06 57.0 221 25.8
COL.COLO4_19702 Corchorus olitorius HOM05D000034 ORTHO05D000277 2.0e-06 57.0 142 27.5
Actinidia06690 Actinidia chinensis HOM05D000034 ORTHO05D000277 2.6e-06 56.6 242 24.4
Actinidia23437 Actinidia chinensis HOM05D001405 ORTHO05D001264 2.6e-06 56.6 57 50.9
CSS0010302 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.6e-06 56.6 166 28.3
CSS0015669 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.6e-06 56.6 221 25.8
COL.COLO4_13230 Corchorus olitorius HOM05D000034 ORTHO05D000277 2.6e-06 56.6 183 26.2
COL.COLO4_20957 Corchorus olitorius HOM05D000034 ORTHO05D000277 2.6e-06 56.6 184 23.9
Hma1.2p1_0746F.1_g212360 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 2.6e-06 56.6 141 27.7
Hma1.2p1_0846F.1_g227800 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 2.6e-06 56.6 141 27.7
vmacro06986 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.6e-06 56.6 140 29.3
AUR62025847 Chenopodium quinoa HOM05D000034 ORTHO05D000277 3.4e-06 56.2 119 30.3
Hma1.2p1_0035F.1_g021910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.4e-06 56.2 141 27.7
Sed0003700 Sechium edule HOM05D000034 ORTHO05D000277 3.4e-06 56.2 152 27.6
vmacro15090 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.4e-06 56.2 142 28.9
arahy.Tifrunner.gnm1.ann1.CJLK9M Arachis hypogaea HOM05D000034 ORTHO05D000277 4.5e-06 55.8 55 47.3
MELO3C029013.2 Cucumis melo HOM05D001651 ORTHO05D000277 4.5e-06 55.8 57 38.6
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.5e-06 55.8 141 27.7
Atru.chr10.926 Acer truncatum HOM05D001651 ORTHO05D000277 5.8e-06 55.5 216 27.3
CSS0016960 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 5.8e-06 55.5 221 25.3
CANSAT80G0212 Cannabis sativa HOM05D008011 ORTHO05D000277 5.8e-06 55.5 55 50.9
MELO3C019088.2 Cucumis melo HOM05D001651 ORTHO05D000277 5.8e-06 55.5 112 29.5
ECA233G2230 Erigeron canadensis HOM05D000034 ORTHO05D000037 5.8e-06 55.5 152 29.6
Hma1.2p1_0354F.1_g133450 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.8e-06 55.5 141 27.7
PGR102G0395 Punica granatum HOM05D000034 ORTHO05D000277 5.8e-06 55.5 57 49.1
CSS0008044 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 7.6e-06 55.1 164 28.7
CSS0031455 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 7.6e-06 55.1 51 51.0
CSS0048757 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 7.6e-06 55.1 55 49.1
MELO3C033377.2 Cucumis melo HOM05D001651 ORTHO05D000277 7.6e-06 55.1 114 30.7
Nn3g17802 Nelumbo nucifera HOM05D000034 ORTHO05D000277 7.6e-06 55.1 268 25.7
Atru.chr4.1088 Acer truncatum HOM05D000034 ORTHO05D000037 9.9e-06 54.7 239 25.1
Atru.chr6.616 Acer truncatum HOM05D000034 ORTHO05D000037 9.9e-06 54.7 239 25.1
arahy.Tifrunner.gnm1.ann1.IP4QXJ Arachis hypogaea HOM05D001651 ORTHO05D000277 9.9e-06 54.7 99 35.4
EL10Ac9g21126 Beta vulgaris HOM05D000034 ORTHO05D000037 9.9e-06 54.7 110 35.5
CSS0042392 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 9.9e-06 54.7 217 26.7
AUR62008330 Chenopodium quinoa HOM05D000034 ORTHO05D000037 9.9e-06 54.7 119 30.3
AUR62010683 Chenopodium quinoa HOM05D000034 ORTHO05D000037 9.9e-06 54.7 119 30.3
AUR62024632 Chenopodium quinoa HOM05D000034 ORTHO05D000277 9.9e-06 54.7 119 30.3
AUR62042450 Chenopodium quinoa HOM05D000034 ORTHO05D000277 9.9e-06 54.7 119 30.3
MELO3C035564.2 Cucumis melo HOM05D001651 ORTHO05D000277 9.9e-06 54.7 137 26.3


User provided reference genes

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