Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 1.4e-114 416.4 218 100.0
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.6e-78 296.6 225 72.9
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 7.8e-78 294.3 225 72.9
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 7.9e-62 241.1 225 64.0
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.4e-55 220.3 228 58.3
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 1.9e-55 219.9 220 59.5
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 2.1e-54 216.5 218 59.2
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 2.7e-54 216.1 219 56.6
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 7.9e-54 214.5 219 58.4
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 3.9e-53 212.2 226 57.1
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 3.9e-53 212.2 219 59.8
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 8.7e-53 211.1 219 58.0
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 1.1e-52 210.7 222 57.7
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 1.1e-52 210.7 219 58.4
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 2.5e-52 209.5 218 57.3
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 3.3e-52 209.1 221 59.7
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 4.3e-52 208.8 219 58.4
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 7.4e-52 208.0 219 57.5
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 9.6e-52 207.6 218 58.7
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.3e-51 207.2 218 56.9
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 2.1e-51 206.5 218 56.4
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 2.1e-51 206.5 219 58.0
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 2.1e-51 206.5 219 58.0
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 3.7e-51 205.7 227 54.6
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 8.1e-51 204.5 218 56.4
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 8.1e-51 204.5 218 59.2
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 8.1e-51 204.5 218 56.4
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 1.4e-50 203.8 217 59.0
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 1.8e-50 203.4 218 57.3
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 1.8e-50 203.4 219 58.4
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 4.0e-50 202.2 210 57.6
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 5.3e-50 201.8 221 57.0
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 6.9e-50 201.4 218 56.4
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 9.0e-50 201.1 220 56.8
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 9.0e-50 201.1 216 56.5
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 1.2e-49 200.7 218 55.0
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.5e-49 200.3 218 56.9
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.0e-49 199.9 209 57.9
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 2.6e-49 199.5 217 55.3
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 4.5e-49 198.7 222 55.0
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 1.0e-48 197.6 221 57.0
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 1.0e-48 197.6 219 56.6
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 1.7e-48 196.8 223 54.7
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 2.2e-48 196.4 222 54.5
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.9e-48 196.1 218 53.7
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 6.5e-48 194.9 218 55.5
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 1.4e-47 193.7 220 56.4
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 1.9e-47 193.4 221 57.5
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 2.5e-47 193.0 165 67.3
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 5.5e-47 191.8 217 54.4
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 7.1e-47 191.4 218 52.3
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 7.1e-47 191.4 212 56.6
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 3.5e-46 189.1 217 55.8
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 4.6e-46 188.7 239 51.9
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 1.8e-45 186.8 238 51.3
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 3.9e-45 185.7 226 51.3
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 5.1e-45 185.3 227 52.0
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 5.1e-45 185.3 217 53.5
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 6.7e-45 184.9 233 51.1
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 6.7e-45 184.9 218 56.0
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 8.7e-45 184.5 219 51.6
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 1.1e-44 184.1 218 52.8
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 1.5e-44 183.7 225 52.0
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 1.9e-44 183.3 222 53.2
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 2.5e-44 183.0 211 55.0
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 4.3e-44 182.2 221 53.8
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 4.3e-44 182.2 217 53.9
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 9.6e-44 181.0 227 52.9
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 2.1e-43 179.9 220 52.3
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 4.8e-43 178.7 213 52.6
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 4.8e-43 178.7 215 50.7
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 4.8e-43 178.7 217 53.0
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 1.1e-42 177.6 220 51.4
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 1.1e-42 177.6 221 51.6
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 1.8e-42 176.8 157 65.0
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 5.3e-42 175.3 218 50.5
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 5.3e-42 175.3 218 53.2
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 1.5e-41 173.7 211 52.1
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 2.6e-41 172.9 221 51.1
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 2.6e-41 172.9 221 51.1
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 5.9e-41 171.8 222 51.4
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 5.0e-40 168.7 213 49.3
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 6.5e-40 168.3 212 51.9
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 7.2e-39 164.9 168 57.7
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 7.2e-39 164.9 130 70.0
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 2.1e-38 163.3 213 47.9
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 2.7e-38 162.9 168 56.5
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 3.6e-38 162.5 213 51.2
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 3.6e-38 162.5 213 51.2
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 7.9e-38 161.4 183 53.0
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 1.8e-37 160.2 210 48.6
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 3.0e-37 159.5 120 70.0
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 6.7e-37 158.3 214 52.3
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 6.7e-37 158.3 214 52.3
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.5e-36 156.4 223 45.3
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 3.3e-36 156.0 110 71.8
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 5.7e-36 155.2 218 47.2
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 4.8e-35 152.1 207 49.3
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 3.1e-34 149.4 118 67.8
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 1.5e-33 147.1 108 67.6
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 1.0e-29 134.4 89 74.2
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.8e-29 133.7 222 43.7
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 3.0e-29 132.9 88 73.9
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 3.3e-28 129.4 79 79.7
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 4.5e-25 119.0 217 43.8
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 1.2e-22 110.9 159 44.0
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.7e-22 109.8 208 38.5
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 6.1e-22 108.6 159 44.0
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 5.2e-21 105.5 216 38.4
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 5.7e-20 102.1 218 39.9
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 2.4e-18 96.7 133 45.1
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 2.3e-13 80.1 129 43.4
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.5e-12 77.4 168 35.7
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 2.0e-12 77.0 218 30.7
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 7.5e-12 75.1 56 67.9
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 3.7e-11 72.8 44 75.0
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 1.8e-10 70.5 45 73.3
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 2.4e-10 70.1 46 69.6
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 4.1e-10 69.3 156 41.7
Nitab4.5_0008976g0040 Nicotiana tabacum HOM05D006141 ORTHO05D007670 2.7e-09 66.6 130 43.8
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 1.9e-07 60.5 153 34.0


User provided reference genes

Program Settings