Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 2.9e-132 475.3 259 100.0
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 1.4e-89 333.6 270 73.0
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 5.3e-89 331.6 262 69.8
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 9.6e-83 310.8 264 64.8
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 5.3e-73 278.5 238 63.4
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 6.9e-73 278.1 267 60.3
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.2e-72 277.3 244 61.9
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 3.4e-72 275.8 262 63.4
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 4.5e-72 275.4 243 60.5
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 8.4e-71 271.2 261 58.6
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.9e-70 270.0 268 63.1
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 2.5e-70 269.6 242 67.4
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 6.0e-69 265.0 238 63.9
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 6.0e-69 265.0 267 62.2
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 1.3e-68 263.8 249 61.8
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.3e-68 263.8 249 58.6
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.3e-68 263.1 248 60.1
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.9e-68 262.3 251 57.8
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.5e-67 260.4 254 57.9
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.5e-67 260.4 252 63.5
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 3.3e-67 259.2 240 61.7
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 7.4e-67 258.1 258 60.9
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 1.6e-66 256.9 246 61.8
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 2.1e-66 256.5 238 66.4
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 2.1e-66 256.5 268 55.6
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 2.8e-66 256.1 245 62.4
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 2.8e-66 256.1 273 54.2
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 3.7e-66 255.8 247 64.0
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 3.7e-66 255.8 261 62.5
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 4.8e-66 255.4 257 62.3
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 8.2e-66 254.6 267 62.2
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 3.1e-65 252.7 265 58.5
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 4.0e-65 252.3 274 61.3
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 1.2e-64 250.8 249 57.4
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.5e-64 250.4 270 59.6
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.5e-64 250.4 283 59.0
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 2.6e-64 249.6 249 57.0
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 1.0e-63 247.7 267 58.4
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 1.3e-63 247.3 257 56.0
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 2.9e-63 246.1 265 57.7
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.9e-63 246.1 237 65.4
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 3.8e-63 245.7 237 65.4
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 8.4e-63 244.6 244 63.5
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 1.1e-62 244.2 244 57.4
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.9e-62 243.4 285 56.5
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 2.5e-62 243.0 265 57.7
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 2.5e-62 243.0 301 53.5
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 7.1e-62 241.5 266 59.4
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 9.3e-62 241.1 254 61.0
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.1e-61 240.0 196 62.2
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 6.0e-61 238.4 221 61.1
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 6.0e-61 238.4 262 58.4
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 6.0e-61 238.4 249 60.6
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 1.0e-60 237.7 273 54.9
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 3.0e-60 236.1 244 55.3
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 3.0e-60 236.1 259 59.1
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.9e-60 235.7 237 63.7
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 8.7e-60 234.6 258 58.5
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 5.7e-59 231.9 275 53.8
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 9.7e-59 231.1 278 59.4
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 2.8e-58 229.6 270 56.7
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.7e-58 229.2 255 58.0
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 8.2e-58 228.0 271 54.2
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 1.4e-57 227.3 280 55.0
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.8e-57 226.9 217 63.1
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 4.1e-57 225.7 258 57.4
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 5.9e-56 221.9 278 52.9
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 1.3e-55 220.7 271 54.2
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 2.2e-55 219.9 265 55.5
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.4e-54 217.2 220 58.6
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 2.5e-54 216.5 271 55.7
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 9.4e-54 214.5 247 53.0
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.6e-53 213.8 287 47.4
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 1.6e-53 213.8 250 53.2
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 4.6e-53 212.2 228 60.5
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 3.9e-52 209.1 227 53.3
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 6.7e-52 208.4 221 59.7
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-51 207.6 241 56.0
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 1.1e-51 207.6 273 52.7
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.3e-51 206.1 240 50.4
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 4.3e-51 205.7 241 56.4
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 5.7e-51 205.3 219 59.8
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 2.8e-50 203.0 216 57.9
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 2.8e-50 203.0 216 57.9
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.8e-50 203.0 285 50.5
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 2.8e-50 203.0 303 47.5
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.7e-50 202.6 241 54.8
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 3.7e-50 202.6 224 57.1
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 3.1e-49 199.5 221 57.5
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.1e-49 199.5 242 55.0
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 9.1e-49 198.0 252 50.4
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 9.1e-49 198.0 260 52.7
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-48 197.6 242 54.5
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.5e-48 197.2 237 48.5
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 2.0e-48 196.8 222 57.7
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 2.0e-48 196.8 255 46.3
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-48 196.1 275 50.5
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.3e-47 194.1 274 50.0
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.3e-47 194.1 237 48.5
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 1.3e-47 194.1 250 46.8
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 2.9e-47 193.0 242 53.3
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 5.0e-47 192.2 241 53.9
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 5.0e-47 192.2 234 53.8
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.9e-46 190.3 232 47.4
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 4.2e-46 189.1 245 46.5
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 4.2e-46 189.1 209 49.3
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 7.2e-46 188.3 243 53.9
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.6e-45 187.2 237 47.3
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 1.8e-44 183.7 237 46.8
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.5e-43 180.6 243 46.5
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 4.4e-43 179.1 254 47.2
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 4.4e-43 179.1 254 45.3
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 7.4e-43 178.3 246 44.3
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.8e-42 176.4 235 46.4
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 4.8e-42 175.6 233 45.5
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 1.1e-41 174.5 262 43.1
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 5.3e-41 172.2 233 45.1
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 5.3e-41 172.2 237 43.5
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.2e-40 171.0 102 75.5
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.5e-40 170.6 246 45.1
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.0e-40 170.2 242 43.4
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.2e-39 166.8 117 68.4
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 3.8e-39 166.0 138 60.9
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.2e-38 162.9 121 62.8
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 1.2e-37 161.0 118 65.3
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-37 161.0 262 42.7
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 3.6e-37 159.5 245 49.8
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.4e-36 157.5 244 41.8
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.5e-35 154.1 246 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 4.1e-33 146.0 257 42.4
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.0e-31 141.4 275 40.4
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.5e-30 137.5 223 37.2
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 8.0e-29 131.7 252 37.7
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.0e-28 131.3 103 56.3
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.0e-28 129.8 232 36.6
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 3.0e-28 129.8 103 56.3
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-27 127.9 103 54.4
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.2e-27 127.9 103 54.4
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 3.1e-25 119.8 252 34.1
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-24 117.9 222 36.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-24 117.9 92 57.6
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.7e-23 114.0 86 58.1
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 2.2e-23 113.6 230 32.6
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.1e-22 111.3 87 56.3
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 2.5e-22 110.2 100 52.0
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 7.2e-22 108.6 86 54.7
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 7.2e-22 108.6 68 72.1
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 1.2e-21 107.8 92 53.3
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 3.4e-19 99.8 86 52.3
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 5.7e-19 99.0 71 66.2
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 3.7e-18 96.3 169 40.2
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 6.8e-12 75.5 119 41.2
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 3.4e-11 73.2 102 40.2
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 2.8e-10 70.1 75 61.3
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.5e-08 63.2 39 71.8
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.9e-06 57.4 109 39.4
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 2.5e-06 57.0 86 38.4


User provided reference genes

Program Settings