Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 3.3e-245 851.3 439 100.0
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.3e-214 748.8 402 93.8
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 8.9e-214 746.9 402 93.3
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 7.0e-211 737.3 446 86.3
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 5.2e-206 721.1 449 83.1
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.6e-202 709.5 442 82.1
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.3e-201 705.7 443 81.9
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.1e-200 703.4 441 81.0
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.6e-200 701.0 446 81.2
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.6e-200 701.0 447 81.7
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 9.5e-200 700.3 439 81.5
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.1e-199 699.1 446 79.6
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 3.6e-199 698.4 442 81.7
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.6e-199 698.4 442 81.9
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 3.6e-199 698.4 439 81.8
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.6e-199 698.4 445 82.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.1e-198 696.8 443 81.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.8e-198 696.0 440 81.1
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.1e-198 695.3 442 80.5
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.1e-198 695.3 442 80.5
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.1e-198 695.3 436 81.4
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 4.0e-198 694.9 440 81.8
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.2e-197 693.3 442 80.5
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.5e-197 693.0 441 81.0
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.4e-197 691.8 446 80.7
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 7.5e-197 690.6 441 81.0
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.9e-196 688.7 441 81.4
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.7e-196 688.3 441 79.8
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 4.9e-196 688.0 442 80.8
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 6.4e-196 687.6 438 80.4
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.2e-195 685.3 440 81.6
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 4.1e-195 684.9 438 79.9
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 4.1e-195 684.9 438 79.9
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 5.4e-195 684.5 442 80.8
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 5.4e-195 684.5 441 80.0
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 9.2e-195 683.7 438 80.1
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.2e-194 683.3 443 79.5
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.1e-194 682.6 441 80.7
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 2.1e-194 682.6 448 79.0
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 2.7e-194 682.2 443 79.5
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.7e-194 682.2 440 81.1
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.6e-194 681.4 405 84.4
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 7.8e-194 680.6 437 78.7
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.0e-193 680.2 443 80.1
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.0e-193 680.2 439 79.0
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 3.9e-193 678.3 440 78.4
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 3.9e-193 678.3 441 79.8
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 6.6e-193 677.6 439 79.7
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 6.6e-193 677.6 445 79.3
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 8.6e-193 677.2 438 79.5
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.1e-192 676.8 437 79.6
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.9e-192 676.0 437 79.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.9e-192 676.0 448 78.1
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.5e-192 675.6 437 79.6
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 3.3e-192 675.2 441 80.0
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 4.3e-192 674.9 445 79.1
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 7.3e-192 674.1 441 78.9
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 9.5e-192 673.7 439 78.8
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 9.5e-192 673.7 437 79.9
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.2e-191 673.3 437 78.9
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 2.8e-191 672.2 398 84.9
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 2.8e-191 672.2 441 79.4
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.2e-191 671.0 444 77.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.4e-190 669.8 439 78.4
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.4e-190 669.8 443 79.0
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.4e-190 669.1 448 78.1
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.0e-190 668.3 438 78.8
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 4.0e-190 668.3 439 77.7
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 4.0e-190 668.3 434 78.8
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 5.2e-190 667.9 440 77.0
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 5.2e-190 667.9 440 78.2
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 6.8e-190 667.5 435 78.2
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.2e-189 666.8 437 78.3
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.5e-189 666.4 441 78.2
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 3.4e-189 665.2 446 77.4
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 3.4e-189 665.2 442 79.0
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 5.8e-189 664.5 440 78.2
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 5.8e-189 664.5 450 76.4
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.3e-188 663.3 440 78.4
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 3.8e-188 661.8 444 77.0
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 8.4e-188 660.6 448 77.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 8.4e-188 660.6 440 77.5
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 8.4e-188 660.6 440 77.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.1e-187 660.2 406 82.5
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 4.2e-187 658.3 442 77.4
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 5.4e-187 657.9 442 77.4
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 7.1e-187 657.5 411 80.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 9.2e-187 657.1 411 80.8
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.2e-186 656.8 444 76.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.2e-186 656.8 439 77.2
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.2e-186 656.8 446 76.9
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.0e-185 653.7 443 77.0
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.0e-185 653.7 437 77.3
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 6.6e-185 651.0 388 83.2
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 8.7e-185 650.6 439 76.5
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 8.7e-185 650.6 439 77.7
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.5e-184 649.0 399 81.0
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 4.3e-184 648.3 411 79.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 4.3e-184 648.3 411 79.8
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.2e-183 646.7 440 76.4
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.1e-183 646.0 390 82.6
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 8.1e-183 644.0 440 76.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.4e-182 643.3 438 76.3
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 3.4e-181 638.6 440 75.5
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 3.4e-181 638.6 440 75.5
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 3.4e-181 638.6 435 75.6
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.3e-180 636.7 447 74.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.7e-180 636.3 483 71.2
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.9e-180 634.8 432 74.8
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-179 633.6 381 82.4
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.9e-179 632.9 431 75.4
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.2e-178 630.2 413 77.5
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.1e-178 629.4 444 75.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.7e-178 629.0 379 82.6
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 7.8e-178 627.5 479 70.1
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.5e-176 622.5 390 81.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 6.9e-174 614.4 480 67.9
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 9.9e-173 610.5 440 73.6
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 3.1e-166 589.0 440 71.1
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.5e-165 585.1 388 78.6
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.0e-161 572.4 442 69.5
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.4e-158 563.5 365 80.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.0e-156 557.4 360 79.7
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 4.6e-154 548.5 403 68.2
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.2e-151 539.7 401 67.6
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 4.1e-150 535.4 388 67.0
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 2.0e-149 533.1 361 77.3
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.5e-147 526.2 363 70.0
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.6e-146 523.5 305 85.6
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 2.5e-144 516.2 403 65.0
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.4e-142 510.4 379 65.7
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.4e-142 510.4 377 66.0
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 4.5e-141 505.4 397 65.7
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 5.0e-140 501.9 361 70.1
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 7.2e-139 498.0 366 64.5
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.6e-138 496.9 431 60.1
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.1e-138 496.5 374 65.5
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.7e-138 496.1 374 65.5
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.7e-138 496.1 403 64.3
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.0e-136 490.0 365 63.8
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.3e-132 477.2 365 63.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.7e-130 469.5 360 64.2
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 3.6e-130 469.2 318 75.8
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.6e-114 417.2 360 60.0
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.3e-99 366.3 371 55.3
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 2.7e-93 346.7 302 60.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.3e-83 312.8 215 73.0
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.7e-69 266.9 186 75.8
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-68 264.6 328 44.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 4.3e-59 233.0 199 60.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-58 230.7 139 83.5
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-57 228.4 123 87.0
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 9.0e-57 225.3 160 69.4
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.4e-41 174.1 162 55.6
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.3e-36 158.3 119 67.2
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.6e-34 151.4 111 73.0
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 7.7e-32 142.5 81 85.2
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 2.1e-29 134.4 80 83.8
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.3e-26 125.2 140 47.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.7e-26 123.6 80 67.5
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.0e-20 105.5 74 64.9
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.4e-17 95.1 51 82.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.2e-15 87.8 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.7e-07 61.6 35 82.9


User provided reference genes

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