Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 8.9e-50 199.9 97 100.0
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 8.4e-40 166.8 125 68.0
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.2e-38 162.9 126 66.7
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 2.7e-38 161.8 126 65.9
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 7.8e-38 160.2 126 66.7
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.0e-37 159.8 126 66.7
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.0e-37 159.8 126 66.7
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.3e-37 159.5 126 65.1
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 3.0e-37 158.3 126 65.9
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 3.9e-37 157.9 126 65.9
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 3.9e-37 157.9 126 65.1
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 3.9e-37 157.9 126 65.9
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 6.6e-37 157.1 126 66.7
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 6.6e-37 157.1 126 65.1
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 8.7e-37 156.8 126 65.9
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 8.7e-37 156.8 126 63.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 8.7e-37 156.8 126 65.1
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.1e-36 156.4 127 65.4
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.1e-36 156.4 126 65.1
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.5e-36 156.0 126 65.9
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.5e-36 156.0 126 64.3
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.9e-36 155.6 120 65.8
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.9e-36 155.6 126 64.3
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 3.3e-36 154.8 126 65.9
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 3.3e-36 154.8 126 65.1
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.3e-36 154.8 126 63.5
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 4.3e-36 154.5 126 63.5
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 4.3e-36 154.5 126 65.9
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 4.3e-36 154.5 126 63.5
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 4.3e-36 154.5 125 65.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 4.3e-36 154.5 126 64.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 4.3e-36 154.5 126 63.5
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.3e-36 154.5 127 63.0
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 5.6e-36 154.1 125 63.2
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 5.6e-36 154.1 127 62.2
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 7.3e-36 153.7 126 65.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 7.3e-36 153.7 126 65.1
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 7.3e-36 153.7 126 63.5
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 7.3e-36 153.7 126 62.7
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 7.3e-36 153.7 126 64.3
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 9.6e-36 153.3 126 65.1
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 9.6e-36 153.3 126 65.1
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 9.6e-36 153.3 126 65.1
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 9.6e-36 153.3 126 65.1
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 9.6e-36 153.3 125 61.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 9.6e-36 153.3 125 61.6
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 9.6e-36 153.3 126 64.3
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 9.6e-36 153.3 126 62.7
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.3e-35 152.9 126 64.3
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.3e-35 152.9 126 64.3
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.3e-35 152.9 125 64.0
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-35 152.5 126 64.3
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-35 152.5 127 64.6
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-35 152.5 126 64.3
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.6e-35 152.5 126 64.3
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.6e-35 152.5 126 63.5
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 2.1e-35 152.1 126 65.1
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 2.1e-35 152.1 126 63.5
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 2.1e-35 152.1 126 64.3
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 2.8e-35 151.8 126 62.7
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 2.8e-35 151.8 126 62.7
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 3.6e-35 151.4 126 64.3
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 4.8e-35 151.0 126 62.7
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.8e-35 151.0 126 62.7
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 6.2e-35 150.6 125 61.6
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 8.1e-35 150.2 126 62.7
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 8.1e-35 150.2 126 62.7
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 8.1e-35 150.2 126 62.7
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 8.1e-35 150.2 126 62.7
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.1e-35 150.2 124 62.1
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.1e-34 149.8 124 62.1
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.1e-34 149.8 126 61.1
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.1e-34 149.8 126 61.9
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.1e-34 149.8 126 61.9
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 1.4e-34 149.4 126 63.5
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.4e-34 149.4 126 62.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 1.4e-34 149.4 126 63.5
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.8e-34 149.1 126 62.7
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 2.4e-34 148.7 126 61.9
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 2.4e-34 148.7 126 61.9
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 2.4e-34 148.7 126 62.7
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.3e-34 147.5 126 61.9
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 6.9e-34 147.1 126 62.7
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.9e-34 147.1 126 62.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.9e-34 147.1 126 61.9
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 6.9e-34 147.1 126 62.7
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.2e-33 146.4 126 60.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.2e-33 146.4 124 61.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.2e-33 146.4 126 61.9
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.2e-33 146.4 126 63.5
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 2.0e-33 145.6 126 61.9
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.0e-33 145.6 140 56.4
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 2.0e-33 145.6 126 63.5
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.6e-33 145.2 125 61.6
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.4e-33 144.8 126 61.9
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 4.5e-33 144.4 126 59.5
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.5e-33 144.4 125 61.6
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 4.5e-33 144.4 127 60.6
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 9.9e-33 143.3 126 61.9
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 9.9e-33 143.3 126 60.3
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.7e-32 142.5 126 60.3
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 2.4e-31 138.7 114 62.3
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 4.6e-30 134.4 112 63.4
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 6.0e-30 134.0 126 57.1
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.0e-29 133.3 126 55.6
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 5.1e-29 131.0 126 57.9
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.1e-28 129.8 104 66.3
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 4.3e-28 127.9 126 54.8
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 5.6e-28 127.5 124 54.8
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.4e-26 122.9 107 61.7
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 4.0e-26 121.3 94 64.9
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 4.0e-26 121.3 126 52.4
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.5e-25 119.4 94 63.8
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.5e-25 119.4 107 59.8
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 2.0e-25 119.0 107 58.9
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.6e-25 118.6 112 58.9
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 3.4e-25 118.2 107 59.8
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 7.6e-25 117.1 107 58.9
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.3e-24 116.3 107 58.9
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.7e-24 115.9 107 60.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.7e-24 115.9 107 58.9
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 2.9e-24 115.2 112 58.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 4.9e-24 114.4 107 57.0
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.1e-23 113.2 107 57.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.4e-23 112.8 93 60.2
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.9e-23 112.5 107 57.0
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 9.3e-23 110.2 107 54.2
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 7.9e-22 107.1 124 49.2
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 3.0e-21 105.1 112 52.7
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 8.7e-21 103.6 139 45.3
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 5.6e-20 100.9 122 45.9
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 6.2e-19 97.4 100 58.0
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.7e-16 89.4 141 39.0
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 8.4e-16 87.0 50 80.0
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.9e-15 85.9 105 42.9
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 9.3e-15 83.6 51 74.5
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.7e-14 82.0 100 52.0
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 1.8e-13 79.3 51 70.6
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 3.3e-12 75.1 75 52.0
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 8.2e-11 70.5 45 75.6
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.4e-10 69.7 45 75.6
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 9.0e-10 67.0 45 73.3
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.9e-08 62.0 86 45.3
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 5.0e-08 61.2 91 36.3
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.2e-07 58.5 86 41.9
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-06 56.6 79 43.0
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 2.1e-06 55.8 42 66.7
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 2.7e-06 55.5 45 62.2
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 4.6e-06 54.7 33 75.8
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 6.1e-06 54.3 88 43.2
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 7.9e-06 53.9 103 35.0


User provided reference genes

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