Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 0.0e+00 1746.5 885 100.0
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 0.0e+00 1372.8 886 78.8
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 0.0e+00 1323.1 901 75.2
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.8e-266 922.9 683 68.5
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.4e-255 886.7 877 54.3
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.2e-239 832.4 884 51.6
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.0e-237 827.4 886 51.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.8e-237 826.6 884 50.8
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.6e-236 822.8 882 52.0
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.2e-235 819.7 917 49.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.2e-235 819.7 884 51.4
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.3e-235 818.1 889 50.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 8.3e-235 817.8 881 51.8
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 9.1e-234 814.3 883 51.1
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.9e-232 809.3 890 50.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 3.8e-232 808.9 888 50.9
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.1e-231 807.4 890 49.4
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.2e-231 805.8 890 50.4
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.2e-231 804.7 886 50.5
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 7.2e-231 804.7 890 50.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.1e-230 803.1 880 50.5
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.6e-230 802.4 886 50.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 5.2e-229 798.5 884 49.4
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 6.8e-229 798.1 886 50.3
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 9.8e-228 794.3 747 56.5
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.7e-227 793.5 880 48.6
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.2e-227 793.1 880 50.1
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.8e-226 790.0 880 48.3
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 7.0e-226 788.1 879 49.4
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-225 787.3 887 47.9
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.2e-225 787.3 881 49.1
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 3.3e-223 779.2 879 50.6
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.5e-223 778.5 881 47.4
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.6e-222 775.8 885 48.7
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 6.1e-222 775.0 889 48.1
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.2e-220 770.8 882 48.8
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 9.8e-220 767.7 865 47.9
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.3e-219 767.3 879 48.9
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 6.3e-219 765.0 878 48.6
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 8.3e-219 764.6 883 48.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.2e-217 760.8 879 49.6
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.9e-217 758.4 881 47.0
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-216 757.7 881 47.0
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.8e-214 749.6 749 54.3
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 6.1e-214 748.4 887 47.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 8.9e-213 744.6 888 47.4
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.4e-212 742.7 884 47.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.1e-210 737.6 884 46.2
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 7.8e-209 731.5 884 46.5
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.3e-208 729.9 894 46.0
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.3e-208 729.9 840 46.7
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 3.0e-208 729.6 884 46.3
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.6e-206 723.8 883 47.2
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 6.2e-206 721.8 883 46.4
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 5.8e-204 715.3 882 46.5
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 7.5e-204 714.9 861 46.0
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.2e-203 713.4 887 46.4
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 6.4e-203 711.8 895 44.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.2e-202 709.5 858 47.9
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.9e-199 700.3 950 43.4
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 3.3e-199 699.5 900 45.3
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.2e-198 697.6 885 44.7
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.6e-198 697.2 922 44.6
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.1e-198 696.8 898 44.0
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.4e-197 694.1 876 46.2
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.6e-196 689.9 887 44.8
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.4e-196 689.5 882 42.7
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 4.6e-193 679.1 943 43.9
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 3.9e-192 676.0 882 41.7
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 6.6e-192 675.2 888 42.1
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.4e-189 667.5 894 43.4
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.8e-189 667.2 909 42.5
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.8e-189 667.2 893 42.0
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.4e-186 657.5 892 43.4
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.7e-184 650.6 950 41.9
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 4.0e-181 639.4 890 41.0
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 9.0e-181 638.3 882 40.0
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.5e-180 637.5 887 43.1
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 7.6e-180 635.2 893 40.2
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 7.6e-180 635.2 893 40.2
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 3.8e-179 632.9 895 40.2
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 4.9e-179 632.5 883 42.9
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 6.4e-179 632.1 937 41.6
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 7.1e-178 628.6 651 53.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 6.0e-177 625.5 896 39.8
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 7.9e-177 625.2 894 39.8
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.3e-176 623.6 888 40.2
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.3e-174 617.8 699 48.5
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.6e-174 617.5 726 45.6
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.8e-173 614.0 900 42.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.0e-172 610.5 732 47.0
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.6e-172 610.1 890 39.4
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 3.8e-171 606.3 835 42.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 4.9e-171 605.9 699 48.2
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 3.7e-166 589.7 894 39.4
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.4e-165 587.0 802 43.1
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.2e-163 580.5 877 41.2
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.9e-162 577.4 887 40.1
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.9e-154 550.8 717 44.4
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.7e-153 547.0 903 38.3
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 3.7e-150 536.6 879 39.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.9e-146 524.2 631 46.3
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 6.1e-145 519.2 693 44.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.3e-142 511.5 664 42.2
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.9e-138 497.7 679 45.1
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.0e-136 490.3 695 40.3
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.8e-123 446.8 885 34.2
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 6.8e-120 436.0 555 43.2
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 5.7e-119 433.0 639 39.7
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.4e-117 427.6 912 33.4
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.4e-111 406.8 778 33.0
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 2.7e-108 397.5 748 35.7
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 2.7e-108 397.5 754 35.7
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.3e-98 362.8 261 72.0
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.0e-96 359.0 544 36.4
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.4e-86 323.2 234 71.8
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 3.0e-83 314.3 242 69.0
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.1e-81 308.1 253 63.6
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.5e-74 284.6 735 29.5
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.5e-74 284.6 735 29.5
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 5.6e-74 283.5 813 28.2
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.1e-72 279.3 994 26.8
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.4e-72 278.9 736 28.0
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.8e-72 278.5 598 31.1
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.1e-72 277.7 194 73.7
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.6e-68 265.4 519 35.3
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 3.9e-67 260.8 193 68.9
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 2.0e-63 248.4 193 64.2
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 4.5e-63 247.3 208 59.1
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 6.0e-60 236.9 350 40.0
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.1e-57 228.4 785 26.8
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.8e-54 217.6 358 36.0
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-53 216.1 521 29.6
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 7.1e-53 213.4 258 50.0
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.5e-47 195.7 138 69.6
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 5.8e-47 193.7 188 52.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 8.2e-41 173.3 333 33.6
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.6e-39 168.3 213 42.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.0e-38 166.4 190 46.8
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 5.0e-38 164.1 232 38.8
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.2e-36 159.5 143 59.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-34 152.9 164 48.8
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.6e-33 149.1 185 44.9
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.8e-33 148.3 120 62.5
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.4e-32 146.0 219 38.8
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.5e-29 135.2 227 37.4
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 4.2e-29 134.4 222 37.4
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.4e-29 133.3 219 37.0
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 5.7e-26 124.0 84 75.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.4e-24 118.6 88 73.9
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.7e-22 112.5 83 63.9
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.2e-22 112.1 103 54.4
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 7.9e-20 103.6 186 36.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.9e-19 101.3 100 52.0
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 8.8e-19 100.1 304 27.3
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.0e-18 99.0 167 35.9
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.4e-16 92.8 295 27.8
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.5e-13 82.8 171 31.6
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.5e-10 70.5 107 37.4
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.2e-07 63.2 85 40.0
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 2.7e-07 62.0 50 60.0


User provided reference genes

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