Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1469.5 707 100.0
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1281.2 706 87.5
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 718 85.8
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 699 86.3
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1255.4 698 85.0
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1247.6 703 83.5
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1247.3 698 83.5
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1246.5 706 83.0
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1246.1 706 83.7
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1245.0 712 83.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1244.2 705 82.4
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1243.4 698 84.1
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1243.0 698 84.1
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1243.0 706 82.4
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1242.6 705 82.7
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1242.3 705 83.0
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1241.5 705 82.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1241.5 705 82.6
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1241.1 698 84.2
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1239.9 705 82.3
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 705 83.0
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1238.4 706 83.4
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1238.4 698 83.5
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1238.0 707 83.2
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1238.0 698 82.7
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1238.0 697 83.5
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1236.1 705 82.1
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1234.9 706 82.6
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1234.6 705 82.6
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1233.8 704 82.4
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1233.0 701 83.0
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1232.2 706 81.9
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1231.9 698 83.4
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1231.5 705 82.3
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1231.5 698 82.4
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1230.7 705 82.7
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 705 81.8
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 701 82.9
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 698 83.0
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 698 83.1
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 698 83.5
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1229.5 706 81.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1228.8 705 82.4
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1228.0 705 82.3
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1228.0 701 82.7
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1223.4 698 82.4
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1223.0 698 82.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1223.0 698 83.1
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1222.6 747 78.7
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1222.2 698 82.1
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1222.2 703 81.9
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 705 81.4
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1218.8 698 83.0
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1218.0 705 81.4
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1217.6 697 82.6
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1217.2 705 81.4
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 705 80.4
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 708 81.2
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 705 81.6
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 698 81.1
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1215.7 705 81.7
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1215.7 698 81.1
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1215.3 698 81.1
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1215.3 698 81.2
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1215.3 705 80.9
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1214.9 697 82.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1214.5 705 81.1
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1214.1 704 81.4
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1214.1 705 80.7
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1213.7 698 81.9
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1211.8 740 78.5
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1211.1 698 80.8
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1210.3 698 80.9
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1210.3 705 80.6
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1209.1 698 80.8
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1209.1 705 80.6
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1209.1 705 80.9
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 698 80.4
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 705 80.3
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1207.6 698 80.7
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1207.6 698 80.5
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1206.0 702 80.5
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1206.0 704 80.4
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1204.9 704 80.0
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1204.5 698 80.2
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1204.5 704 80.1
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1202.6 702 81.2
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1200.3 705 80.6
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1199.1 745 77.0
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1199.1 745 77.0
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1198.0 663 85.8
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1196.0 757 76.1
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1193.7 694 81.0
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1192.9 698 79.9
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1189.9 720 79.3
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1175.6 705 78.2
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1169.8 801 72.0
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1167.9 716 77.7
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1167.5 716 77.8
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1167.5 715 77.6
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1158.3 697 80.1
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1157.1 708 79.0
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1152.9 694 80.1
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1151.7 698 79.2
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1150.2 705 77.7
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1135.9 659 81.5
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1133.2 704 75.4
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1130.9 716 74.9
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1123.6 694 75.9
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1122.1 698 76.5
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1119.8 705 76.5
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1119.0 697 77.3
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1115.5 704 75.1
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1110.1 697 75.6
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1106.7 638 81.8
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1089.7 615 84.2
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 4.8e-312 1074.3 615 83.1
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.3e-310 1069.3 723 75.7
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 9.3e-306 1053.1 693 71.6
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 7.9e-305 1050.0 585 84.1
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.6e-302 1042.3 701 75.0
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.4e-293 1012.7 699 70.0
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 6.9e-293 1010.4 705 69.9
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.3e-278 963.0 696 65.9
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 3.1e-277 958.4 713 64.5
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.4e-269 932.2 692 63.9
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.7e-254 882.9 690 61.3
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 3.5e-252 875.2 612 67.2
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.2e-247 860.1 527 78.2
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.0e-247 859.4 624 65.2
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 9.8e-247 857.1 700 59.4
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.0e-235 820.5 475 82.7
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 5.6e-234 814.7 702 56.3
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.1e-232 810.4 787 53.1
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 4.1e-221 771.9 502 74.5
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.6e-207 726.1 417 82.0
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.1e-204 716.5 698 52.4
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 6.5e-174 615.1 422 70.1
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 4.7e-156 555.8 377 71.1
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 5.0e-150 535.8 301 86.4
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 8.0e-148 528.5 289 88.9
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.7e-140 502.7 327 73.7
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 7.5e-138 495.4 312 78.2
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 6.4e-129 465.7 349 70.2
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.3e-125 452.2 323 68.4
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.8e-115 421.0 284 71.8
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.2e-104 383.3 312 62.5
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 4.8e-92 343.2 183 83.1
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.6e-90 337.4 209 76.1
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 1.4e-75 288.5 409 44.3
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.3e-69 267.3 168 72.0
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-66 256.5 193 65.3
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.1e-64 252.3 353 43.6
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.2e-63 248.8 208 59.6
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-60 238.0 179 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.4e-46 192.2 219 44.3
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 8.2e-44 183.0 101 78.2
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-42 178.7 101 78.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-40 172.6 179 52.5
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.2e-39 169.1 168 53.6
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-31 141.4 80 76.2
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 6.3e-28 130.2 119 52.1
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.6e-26 125.6 162 46.9
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 8.0e-23 113.2 101 58.4
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.8e-22 112.1 63 74.6
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 3.0e-22 111.3 60 88.3
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 4.0e-22 110.9 154 42.2
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 6.8e-22 110.2 154 42.2
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 5.4e-19 100.5 131 48.1
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 9.2e-19 99.8 110 52.7
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.5e-16 91.7 50 78.0
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.2e-15 89.4 79 58.2
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 9.2e-11 73.2 50 74.0
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-08 65.9 40 67.5
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.5e-08 65.9 41 68.3
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 1.9e-08 65.5 39 69.2
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 2.1e-07 62.0 44 77.3
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 3.6e-07 61.2 116 40.5
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 5.2e-06 57.4 34 79.4


User provided reference genes

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