Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 4.9e-114 414.5 208 100.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.7e-93 345.1 212 86.8
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 8.8e-87 323.9 213 81.2
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.8e-82 308.5 169 90.5
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 8.0e-80 300.8 194 78.9
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-68 263.8 222 68.0
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 3.1e-68 262.3 216 69.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.2e-67 260.4 214 66.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.6e-67 260.0 222 65.8
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.5e-67 258.8 205 67.8
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.5e-67 258.5 219 65.8
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 2.9e-66 255.8 210 67.6
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 3.8e-66 255.4 210 66.2
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.8e-66 255.4 210 67.6
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 5.0e-66 255.0 214 66.8
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 5.0e-66 255.0 154 81.8
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 6.6e-66 254.6 199 68.8
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.6e-66 254.6 208 67.8
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 8.6e-66 254.2 164 79.3
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.9e-65 253.1 210 66.7
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-65 253.1 209 66.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.5e-65 252.7 204 68.1
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.3e-65 252.3 200 68.0
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.3e-65 252.3 203 67.5
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 3.3e-65 252.3 210 66.7
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 7.2e-65 251.1 154 81.8
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 9.5e-65 250.8 172 75.6
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.2e-64 250.4 221 65.2
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.6e-64 250.0 217 64.5
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.6e-64 250.0 216 63.4
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.6e-64 250.0 198 68.2
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.1e-64 249.6 219 65.3
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 3.6e-64 248.8 201 67.2
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 4.7e-64 248.4 153 81.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 4.7e-64 248.4 153 81.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 4.7e-64 248.4 153 81.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.7e-64 248.4 153 81.0
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 4.7e-64 248.4 201 67.2
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 6.1e-64 248.1 154 79.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.1e-64 248.1 214 65.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 6.1e-64 248.1 198 67.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 6.1e-64 248.1 198 67.7
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 8.0e-64 247.7 153 81.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.3e-63 246.1 207 66.2
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.3e-63 246.1 215 67.0
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 5.2e-63 245.0 208 65.9
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 5.2e-63 245.0 208 65.9
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 5.2e-63 245.0 218 65.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 6.8e-63 244.6 209 64.6
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 8.9e-63 244.2 204 68.6
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.5e-62 243.4 154 81.2
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.5e-62 243.4 195 66.7
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.5e-62 243.4 220 65.5
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.5e-62 243.4 216 64.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.0e-62 243.0 214 63.6
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.0e-62 243.0 214 64.5
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.0e-62 243.0 218 64.2
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.0e-62 243.0 215 65.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 3.4e-62 242.3 213 63.8
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 4.4e-62 241.9 181 71.3
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.7e-62 241.5 211 65.9
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 5.7e-62 241.5 164 75.6
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 5.7e-62 241.5 162 76.5
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 5.7e-62 241.5 212 65.6
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 5.7e-62 241.5 206 65.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.5e-62 241.1 211 65.9
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 7.5e-62 241.1 216 62.5
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 7.5e-62 241.1 219 65.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.3e-61 240.4 218 65.1
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-61 240.0 211 65.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.7e-61 240.0 209 66.0
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 2.2e-61 239.6 195 65.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.2e-61 239.6 204 64.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.2e-61 239.6 211 64.5
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.2e-61 239.6 216 63.0
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 6.3e-61 238.0 187 69.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.1e-60 237.3 204 64.2
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.1e-60 237.3 206 63.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.4e-60 236.9 181 71.3
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.4e-60 236.1 167 73.7
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 3.1e-60 235.7 181 70.7
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 9.2e-60 234.2 210 63.3
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.6e-59 233.4 208 63.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-59 233.4 205 63.4
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-59 233.4 205 62.9
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.6e-59 233.4 223 60.5
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.7e-59 232.6 213 62.0
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 3.5e-59 232.3 212 62.7
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 5.9e-59 231.5 205 62.4
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.9e-59 231.5 205 62.4
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.9e-59 231.5 205 62.4
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.0e-58 230.7 208 63.9
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.0e-58 230.7 205 62.4
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.3e-58 230.3 157 74.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.3e-58 229.6 216 61.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.6e-58 228.0 215 61.4
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 8.6e-58 227.6 156 74.4
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.1e-57 227.3 216 58.3
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-56 223.8 231 60.2
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.6e-56 222.2 204 63.7
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 6.1e-56 221.5 141 78.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 3.1e-55 219.2 216 61.6
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 3.4e-54 215.7 274 49.6
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.4e-54 215.3 152 71.1
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.7e-53 213.4 208 62.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.9e-53 212.6 123 83.7
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 2.4e-52 209.5 208 57.2
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 2.4e-52 209.5 213 58.7
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 4.1e-52 208.8 222 56.8
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 5.4e-52 208.4 172 64.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 7.0e-52 208.0 211 59.2
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 9.2e-52 207.6 194 58.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 5.0e-50 201.8 274 44.9
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 3.3e-49 199.1 204 58.3
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 9.5e-49 197.6 185 60.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.2e-48 197.2 212 57.1
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.7e-48 195.3 212 55.7
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.7e-48 195.3 212 55.7
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.4e-47 193.7 153 66.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 6.8e-47 191.4 155 64.5
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.4e-46 189.1 197 55.3
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 4.4e-46 188.7 125 72.0
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 9.2e-44 181.0 102 88.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.0e-42 176.0 118 72.9
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.5e-41 173.7 214 49.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.5e-41 172.9 118 71.2
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 9.9e-38 161.0 93 80.6
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.4e-36 157.1 161 56.5
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.3e-34 149.8 108 64.8
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.1e-34 148.7 142 53.5
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 6.6e-34 148.3 151 51.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.5e-33 147.1 108 63.9
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.9e-33 146.7 81 88.9
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 2.5e-33 146.4 112 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 8.9e-31 137.9 106 61.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 9.9e-30 134.4 223 42.6
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.9e-28 130.2 92 65.2
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-25 120.2 67 85.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-25 120.2 67 85.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.9e-25 120.2 80 73.8
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.6e-22 109.8 138 52.9
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 3.3e-17 92.8 79 58.2
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 4.8e-16 89.0 140 44.3
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.2e-13 80.1 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.6e-11 73.9 166 35.5
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 3.1e-07 59.7 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 3.4e-06 56.2 63 50.8


User provided reference genes

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