Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 2.9e-140 501.9 257 100.0
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 5.6e-67 258.5 258 61.2
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.1e-46 191.0 255 49.4
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.4e-46 189.9 316 44.6
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.3e-44 183.3 259 47.5
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 4.0e-41 172.6 186 59.7
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-40 169.9 255 46.7
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 2.6e-40 169.9 262 45.8
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 6.5e-39 165.2 258 46.1
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.1e-38 164.5 263 46.4
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.1e-38 161.8 255 44.7
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 9.3e-38 161.4 255 48.2
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 3.5e-37 159.5 255 48.2
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 4.6e-37 159.1 258 46.9
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.6e-37 159.1 270 45.9
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.6e-37 159.1 270 45.9
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 7.9e-37 158.3 259 45.2
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.3e-36 157.5 255 46.3
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.8e-36 157.1 256 46.1
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 3.9e-36 156.0 256 47.3
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.9e-35 153.7 255 45.9
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.9e-35 153.7 255 45.9
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.9e-35 153.7 256 46.9
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.5e-35 153.3 253 45.8
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 3.3e-35 152.9 256 45.3
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.7e-35 152.1 257 45.9
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 9.7e-35 151.4 255 43.1
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 9.7e-35 151.4 257 45.9
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.1e-34 150.2 256 44.5
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 6.3e-34 148.7 255 43.5
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 6.3e-34 148.7 254 44.5
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.1e-33 147.9 256 44.9
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 3.1e-33 146.4 307 37.5
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 3.1e-33 146.4 255 43.9
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 5.3e-33 145.6 255 43.9
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.3e-33 145.6 257 44.7
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.9e-33 145.2 256 44.1
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 9.0e-33 144.8 255 43.9
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.5e-32 144.1 255 42.4
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 5.9e-32 142.1 255 44.3
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 7.6e-32 141.7 260 45.4
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 2.2e-31 140.2 255 41.6
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 2.9e-31 139.8 256 44.1
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.8e-31 139.4 255 42.4
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 5.0e-31 139.0 254 42.9
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 8.5e-31 138.3 260 41.2
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.4e-30 137.5 254 40.2
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.9e-30 137.1 255 40.4
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 3.2e-30 136.3 239 42.3
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.2e-30 136.3 255 40.0
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 7.2e-30 135.2 252 40.9
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 9.3e-30 134.8 254 43.3
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.6e-29 134.0 268 42.5
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 2.1e-29 133.7 256 43.4
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.6e-29 132.5 256 40.2
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.6e-29 132.5 256 40.2
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.9e-29 131.7 145 55.9
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 7.9e-29 131.7 120 65.0
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.0e-28 131.3 121 64.5
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.0e-28 131.3 121 64.5
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.3e-28 130.2 281 39.5
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.9e-28 129.4 281 40.2
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 5.1e-28 129.0 121 64.5
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 5.1e-28 129.0 254 40.2
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.1e-27 127.9 261 40.2
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.5e-27 127.5 233 42.9
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.5e-27 127.5 233 42.9
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.5e-27 127.5 258 41.9
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.5e-27 126.7 246 41.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 4.3e-27 125.9 121 64.5
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.7e-27 125.6 263 41.4
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 7.4e-27 125.2 121 64.5
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 9.7e-27 124.8 253 40.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 9.7e-27 124.8 121 62.8
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.3e-26 124.4 258 38.0
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.6e-26 124.0 235 42.1
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 2.2e-26 123.6 275 40.0
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 2.8e-26 123.2 258 39.9
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 3.7e-26 122.9 234 42.3
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 3.7e-26 122.9 239 41.0
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 1.8e-25 120.6 121 60.3
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.8e-25 120.6 252 38.1
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 2.4e-25 120.2 243 40.7
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.1e-25 119.8 293 38.6
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.1e-25 119.4 255 40.0
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 9.1e-25 118.2 246 40.7
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 9.1e-25 118.2 257 37.4
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.0e-24 117.1 270 38.5
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.3e-23 114.4 268 38.8
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 2.2e-23 113.6 121 57.9
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 2.9e-23 113.2 256 38.3
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 3.8e-23 112.8 259 36.7
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.1e-22 111.3 261 38.3
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 5.5e-22 109.0 265 38.9
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 5.5e-22 109.0 262 38.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 7.2e-22 108.6 260 35.4
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 9.4e-22 108.2 257 39.3
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 9.4e-22 108.2 121 53.7
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.7e-21 106.7 223 40.8
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.6e-21 106.3 132 52.3
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.0e-20 104.8 257 36.6
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.3e-20 103.6 250 37.6
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 2.3e-20 103.6 261 33.7
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 3.0e-20 103.2 117 51.3
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 5.1e-20 102.4 282 34.4
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 8.8e-20 101.7 257 37.4
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.5e-19 100.9 262 36.6
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.5e-19 100.9 258 36.4
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.8e-18 95.9 265 34.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 4.8e-18 95.9 249 34.9
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 8.2e-18 95.1 108 53.7
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 8.2e-18 95.1 253 37.5
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.1e-17 94.7 119 49.6
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 6.9e-17 92.0 120 48.3
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.2e-16 91.3 274 35.8
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.2e-16 91.3 104 56.7
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.4e-16 89.7 119 47.9
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-15 87.0 163 35.6
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-15 87.0 163 35.6
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.2e-15 87.0 163 35.6
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 8.5e-15 85.1 109 53.2
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.2e-14 82.8 120 45.8
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.2e-13 81.3 120 44.2
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.1e-13 80.5 122 45.1
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.1e-13 80.5 121 44.6
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 5.2e-12 75.9 258 32.6
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 5.2e-12 75.9 112 44.6
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.0e-11 73.9 116 44.8
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 9.7e-11 71.6 257 31.1
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.3e-10 71.2 250 32.8
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 4.8e-10 69.3 239 33.1
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 6.3e-10 68.9 74 62.2
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 1.1e-09 68.2 70 57.1
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.8e-09 67.4 121 38.8
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.1e-09 66.6 121 38.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 7.7e-08 62.0 120 37.5
Gohir.A12G236850 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-07 60.5 142 33.8
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 8.5e-07 58.5 118 36.4
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 1.5e-06 57.8 69 52.2
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 9.4e-06 55.1 63 52.4


User provided reference genes

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