Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 3.0e-35 151.4 79 100.0
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.4e-24 115.2 77 79.2
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.9e-22 107.5 75 78.7
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.7e-19 96.7 77 68.8
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.5e-18 95.1 71 74.6
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 5.6e-18 94.0 77 67.5
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 9.6e-18 93.2 84 61.9
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.6e-17 92.4 82 61.0
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.6e-17 92.4 82 64.6
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.1e-17 92.0 83 63.9
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.1e-17 92.0 82 61.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.1e-17 92.0 82 61.0
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.8e-17 90.9 82 59.8
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 8.1e-17 90.1 81 63.0
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.1e-16 89.7 86 58.1
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-16 89.7 86 58.1
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.8e-16 89.0 84 60.7
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 5.3e-16 87.4 83 57.8
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.2e-15 86.3 83 59.0
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 3.4e-15 84.7 82 58.5
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.4e-15 84.7 77 64.9
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 3.4e-15 84.7 78 62.8
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.4e-15 84.7 84 58.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 4.5e-15 84.3 77 62.3
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 4.5e-15 84.3 83 57.8
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 4.5e-15 84.3 83 56.6
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 4.5e-15 84.3 85 56.5
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 4.5e-15 84.3 82 58.5
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 4.5e-15 84.3 83 59.0
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.3e-14 82.8 83 56.6
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.3e-14 82.8 81 58.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.7e-14 82.4 77 61.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.7e-14 82.4 85 55.3
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 3.8e-14 81.3 84 58.3
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.9e-14 80.9 79 55.7
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 6.4e-14 80.5 87 54.0
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.4e-14 80.1 76 57.9
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 8.4e-14 80.1 82 56.1
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 8.4e-14 80.1 80 58.8
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.4e-13 79.3 77 59.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.4e-13 79.3 80 56.2
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.9e-13 79.0 79 59.5
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.2e-13 78.2 80 57.5
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.2e-13 78.2 77 59.7
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 3.2e-13 78.2 81 56.8
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.2e-13 78.2 85 55.3
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.4e-13 77.4 83 55.4
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 7.1e-13 77.0 76 57.9
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 7.1e-13 77.0 85 52.9
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.3e-13 76.6 91 54.9
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 9.3e-13 76.6 77 58.4
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.2e-12 76.3 89 49.4
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.6e-12 75.9 83 53.0
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-12 75.9 80 56.2
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.6e-12 75.9 80 56.2
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.1e-12 75.5 75 58.7
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.1e-12 75.5 91 53.8
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 2.7e-12 75.1 81 53.1
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.5e-12 74.7 79 51.9
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.6e-12 74.3 87 52.9
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 4.6e-12 74.3 83 55.4
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 6.0e-12 73.9 79 53.2
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 6.0e-12 73.9 79 53.2
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 7.9e-12 73.6 76 56.6
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 7.9e-12 73.6 80 56.2
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 7.9e-12 73.6 81 54.3
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.0e-11 73.2 80 53.8
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.0e-11 73.2 83 55.4
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.3e-11 72.8 76 56.6
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-11 72.8 73 57.5
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.3e-11 72.8 80 55.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.8e-11 72.4 83 55.4
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.8e-11 72.4 75 58.7
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.8e-11 72.4 80 55.0
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.8e-11 72.4 78 53.8
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 2.3e-11 72.0 75 56.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 3.0e-11 71.6 75 56.0
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.9e-11 71.2 79 54.4
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.9e-11 71.2 77 53.2
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 5.1e-11 70.9 75 56.0
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 5.1e-11 70.9 76 55.3
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.1e-11 70.9 91 51.6
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.1e-11 70.9 83 50.6
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 5.1e-11 70.9 89 52.8
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 6.7e-11 70.5 82 56.1
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-10 69.7 76 56.6
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.1e-10 69.7 80 52.5
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.1e-10 69.7 83 51.8
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.5e-10 69.3 77 51.9
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.5e-10 69.3 85 50.6
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.9e-10 68.9 76 55.3
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.9e-10 68.9 78 52.6
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.9e-10 68.9 78 52.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.9e-10 68.9 82 48.8
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.9e-10 68.9 82 48.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.9e-10 68.9 76 55.3
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.5e-10 68.6 79 53.2
AUR62037857 Chenopodium quinoa HOM05D002207 ORTHO05D000519 2.5e-10 68.6 50 78.0
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 2.5e-10 68.6 70 57.1
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.5e-10 68.6 73 56.2
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 2.5e-10 68.6 78 51.3
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.3e-10 68.2 79 53.2
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.3e-10 67.8 76 56.6
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.3e-10 67.8 76 56.6
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 4.3e-10 67.8 84 52.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 5.6e-10 67.4 75 53.3
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 7.4e-10 67.0 78 52.6
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.4e-10 67.0 83 50.6
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.4e-10 67.0 90 46.7
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 7.4e-10 67.0 76 51.3
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.3e-09 66.2 79 51.9
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.3e-09 66.2 81 49.4
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.6e-09 65.9 85 45.9
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-09 65.9 75 53.3
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.6e-09 65.9 85 48.2
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.1e-09 65.5 79 53.2
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.1e-09 65.5 75 53.3
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.8e-09 65.1 73 56.2
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 2.8e-09 65.1 78 52.6
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.8e-09 65.1 80 53.8
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.8e-09 64.3 77 53.2
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.2e-09 63.9 76 51.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 8.1e-09 63.5 85 45.9
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 8.1e-09 63.5 77 53.2
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.1e-08 63.2 71 56.3
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-08 62.8 70 52.9
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.4e-08 62.8 70 52.9
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.4e-08 62.8 74 50.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.8e-08 62.4 79 50.6
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.8e-08 62.4 79 51.9
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 2.4e-08 62.0 82 50.0
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 2.4e-08 62.0 72 50.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 2.4e-08 62.0 73 53.4
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.1e-08 61.6 76 50.0
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 3.1e-08 61.6 72 48.6
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.1e-08 61.6 98 44.9
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.0e-08 61.2 72 48.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 4.0e-08 61.2 93 47.3
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 5.3e-08 60.8 76 47.4
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.3e-08 60.8 73 45.2
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 5.3e-08 60.8 76 53.9
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 6.9e-08 60.5 76 48.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 9.0e-08 60.1 75 50.7
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-07 59.7 82 46.3
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-07 59.7 82 50.0
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.2e-07 59.7 71 53.5
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.2e-07 59.7 83 44.6
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.5e-07 59.3 80 50.0
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.5e-07 59.3 76 48.7
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-07 58.9 73 52.1
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.0e-07 58.9 82 48.8
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 3.4e-07 58.2 86 47.7
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.6e-07 57.0 73 47.9
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 1.7e-06 55.8 49 63.3
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.9e-06 55.1 95 43.2
AUR62028812 Chenopodium quinoa HOM05D000183 ORTHO05D000100 3.8e-06 54.7 38 84.2


User provided reference genes

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