Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 0.0e+00 2286.9 1170 100.0
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 0.0e+00 1485.3 1182 69.0
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 0.0e+00 1445.3 1357 60.4
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 1332.0 1248 60.3
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 1315.1 1248 59.7
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 1241.9 1251 57.8
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 9.6e-311 1070.5 1195 54.6
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 2.3e-240 836.6 1248 44.1
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 2.3e-160 570.9 1280 36.1
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 1.3e-105 389.0 1338 31.7
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.2e-103 382.5 1344 31.0
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.6e-98 362.8 1437 28.5
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 2.6e-95 354.8 1320 30.6
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 3.4e-95 354.4 1325 30.6
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 4.9e-94 350.5 1203 30.6
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 6.9e-88 330.1 1348 29.7
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.7e-86 325.5 1418 29.3
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.1e-85 322.8 1404 29.0
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.1e-82 312.8 1390 29.4
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.1e-69 269.6 1299 28.3
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 5.2e-59 234.2 1267 27.8
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 3.7e-57 228.0 1471 26.9
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 5.0e-54 217.6 1195 26.7
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 2.1e-52 212.2 1259 26.4
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 2.1e-52 212.2 1258 26.2
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 7.7e-47 193.7 1175 26.7
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 6.5e-46 190.7 1251 26.6
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 2.7e-44 185.3 1262 26.3
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 1.4e-43 183.0 1183 26.5
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 2.6e-42 178.7 1241 26.0
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 1.3e-41 176.4 984 28.0
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 6.6e-38 164.1 1165 26.7
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 2.8e-36 158.7 1205 27.6
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.8e-36 158.7 1214 27.4
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.4e-35 156.4 1200 26.5
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.0e-35 155.2 1214 27.3
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 5.2e-35 154.5 1204 27.3
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 6.8e-35 154.1 1217 25.0
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 8.9e-35 153.7 1224 27.1
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 7.5e-34 150.6 1243 25.7
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 7.5e-34 150.6 1184 25.0
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 1.8e-32 146.0 1217 25.9
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.1e-32 144.8 275 42.2
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.2e-31 143.3 1205 27.5
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.5e-31 141.7 1202 27.0
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 7.8e-31 140.6 1187 26.2
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 1.3e-30 139.8 1216 25.2
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 2.9e-30 138.7 1257 25.5
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 8.6e-30 137.1 1203 25.9
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 1.2e-28 133.3 1325 24.1
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 3.6e-28 131.7 1194 26.0
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 4.4e-26 124.8 1163 24.7
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 1.3e-25 123.2 1278 24.9
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 4.9e-25 121.3 1203 24.4
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.1e-24 120.2 1126 25.6
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 1.4e-24 119.8 1225 23.3
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 4.1e-24 118.2 1222 25.3
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 6.0e-23 114.4 1159 25.0
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 2.3e-22 112.5 1041 25.8
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 2.3e-22 112.5 1041 25.8
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.1e-21 110.2 1218 24.3
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 2.1e-20 105.9 131 50.4
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 2.8e-20 105.5 1027 24.3
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 1.4e-19 103.2 1152 23.9
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.8e-19 102.8 1150 24.7
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 2.3e-19 102.4 274 35.4
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 3.1e-19 102.1 1152 23.9
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 1.5e-18 99.8 614 26.7
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 3.7e-17 95.1 1215 23.9
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 1.1e-16 93.6 1243 24.5
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.9e-16 92.8 1213 23.7
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 7.0e-16 90.9 1182 24.5
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 1.2e-15 90.1 1261 24.6
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 3.0e-14 85.5 1198 24.0
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 5.1e-14 84.7 1278 23.2
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 6.6e-14 84.3 1233 24.2
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 6.6e-14 84.3 1227 24.4
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 6.6e-14 84.3 1233 24.2
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.5e-13 83.2 301 28.9
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 2.5e-13 82.4 1082 23.4
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.6e-12 79.7 382 33.2
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 2.8e-12 79.0 1270 23.6
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 3.6e-12 78.6 224 36.2
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 1.4e-11 76.6 280 28.9
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.4e-11 76.6 403 25.6
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 1.8e-11 76.3 358 28.2
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.8e-11 76.3 208 36.5
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.8e-11 76.3 208 36.5
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.1e-11 75.5 1064 23.0
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 4.0e-11 75.1 1204 23.7
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 2.6e-10 72.4 1184 22.6
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 3.4e-10 72.0 1037 22.6
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 5.8e-10 71.2 348 27.0
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 5.8e-10 71.2 1200 24.2
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 9.9e-10 70.5 413 27.8
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 1.3e-09 70.1 349 27.5
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.3e-09 70.1 287 26.8
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 2.2e-09 69.3 633 27.0
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 8.3e-09 67.4 419 26.5
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.9e-08 66.2 1016 23.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 7.1e-08 64.3 249 32.9
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 9.2e-08 63.9 769 22.2
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.2e-07 63.5 336 26.8
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 2.1e-07 62.8 1197 23.9
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 2.7e-07 62.4 297 24.2
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 2.7e-07 62.4 297 24.2
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.5e-07 62.0 1050 22.6
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 3.5e-07 62.0 275 29.8
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 3.5e-07 62.0 297 24.2
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 4.6e-07 61.6 534 28.7
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 7.8e-07 60.8 435 23.9
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 1.3e-06 60.1 577 27.6
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.3e-06 60.1 662 23.1
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 1.7e-06 59.7 327 25.7
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 1.7e-06 59.7 327 25.7
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.7e-06 59.7 334 25.1
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 5.1e-06 58.2 341 29.9
Lsat_1_v5_gn_3_6981 Lactuca sativa HOM05D006627 ORTHO05D007753 5.1e-06 58.2 104 36.5
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 6.6e-06 57.8 254 31.9
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 8.6e-06 57.4 346 24.6
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 8.6e-06 57.4 1211 22.8
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 8.6e-06 57.4 453 28.7


User provided reference genes

Program Settings