Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 4.6e-169 597.8 303 100.0
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.2e-138 495.4 307 84.4
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.0e-132 476.1 267 89.5
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 5.9e-132 474.6 314 80.3
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 5.9e-132 474.6 314 80.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 7.2e-122 441.0 262 84.4
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.6e-121 438.7 267 81.3
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.2e-111 407.1 294 70.4
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 4.4e-111 405.2 266 73.7
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 7.5e-111 404.4 266 75.6
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 4.8e-110 401.7 266 74.1
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 4.8e-110 401.7 278 73.0
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.1e-109 400.6 266 74.8
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 4.1e-109 398.7 269 73.6
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 7.0e-109 397.9 293 68.3
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 9.1e-109 397.5 294 68.0
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.2e-108 397.1 271 74.2
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.6e-108 396.7 284 70.4
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.6e-108 396.7 284 70.4
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 4.5e-108 395.2 266 73.7
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 5.9e-108 394.8 268 72.0
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.0e-107 394.0 272 73.5
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.7e-107 393.3 267 73.0
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.7e-107 393.3 259 73.4
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 2.2e-107 392.9 266 73.3
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 2.9e-107 392.5 315 64.8
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 3.8e-107 392.1 267 72.7
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 3.8e-107 392.1 302 67.9
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.5e-106 390.2 305 64.6
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.5e-106 389.4 270 72.2
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.5e-106 389.4 281 68.0
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 3.2e-106 389.0 266 72.9
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 4.2e-106 388.7 297 67.3
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 4.2e-106 388.7 289 70.2
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 5.5e-106 388.3 265 72.1
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 5.5e-106 388.3 266 71.4
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 7.2e-106 387.9 258 74.4
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 9.4e-106 387.5 268 70.1
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 9.4e-106 387.5 258 74.8
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.2e-105 387.1 301 67.8
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 2.1e-105 386.3 282 67.7
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 2.1e-105 386.3 299 65.9
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 2.7e-105 386.0 276 71.4
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 6.1e-105 384.8 302 67.5
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 6.1e-105 384.8 276 69.6
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.0e-104 384.0 290 68.3
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.4e-104 383.6 266 71.4
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 1.4e-104 383.6 314 64.0
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 2.3e-104 382.9 268 72.8
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.3e-104 382.9 290 68.6
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 4.0e-104 382.1 306 66.7
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 4.0e-104 382.1 280 68.9
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 5.2e-104 381.7 290 67.9
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 5.2e-104 381.7 296 65.9
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 8.8e-104 380.9 259 73.0
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.2e-103 380.6 267 70.4
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.2e-103 380.6 266 70.7
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.2e-103 380.6 259 71.4
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 3.4e-103 379.0 266 70.7
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 4.4e-103 378.6 268 69.4
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 5.7e-103 378.3 260 71.2
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 7.5e-103 377.9 265 67.9
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-102 377.1 272 70.2
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.3e-102 377.1 301 65.1
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-102 377.1 266 69.5
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.7e-102 376.7 266 69.2
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 2.2e-102 376.3 290 66.2
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 2.2e-102 376.3 290 66.2
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 2.8e-102 375.9 291 66.0
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 6.3e-102 374.8 301 65.4
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 6.3e-102 374.8 266 69.2
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.4e-101 373.6 289 64.7
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.4e-101 373.6 322 61.2
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.4e-101 371.7 324 60.2
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 7.0e-101 371.3 257 70.4
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.7e-99 366.7 248 69.0
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 2.9e-99 365.9 233 76.0
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.1e-98 364.0 301 64.5
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 9.5e-98 360.9 352 57.1
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.8e-97 359.4 297 61.6
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.4e-96 357.1 294 63.3
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.4e-96 357.1 279 63.8
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 2.3e-96 356.3 230 75.7
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 6.8e-96 354.8 230 74.8
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.2e-95 354.0 316 58.9
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.5e-95 353.6 245 68.6
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.0e-95 353.2 230 73.9
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 4.4e-95 352.1 320 56.9
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 9.8e-95 350.9 229 74.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-94 349.7 232 72.8
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 4.9e-94 348.6 282 62.1
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 3.8e-91 339.0 261 65.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.8e-91 339.0 284 62.0
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 1.4e-88 330.5 258 66.3
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.0e-88 329.3 374 49.5
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 4.4e-87 325.5 282 59.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 4.6e-84 315.5 250 59.6
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 7.3e-82 308.1 196 73.0
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.6e-81 307.0 256 57.8
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 2.3e-80 303.1 259 58.7
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.4e-79 299.3 267 59.6
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-78 295.4 236 63.6
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 4.1e-77 292.4 227 67.8
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 3.6e-73 279.3 237 64.1
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 2.3e-72 276.6 226 63.3
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.7e-68 263.1 196 60.2
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 3.5e-68 262.7 181 69.6
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.5e-66 257.3 197 66.0
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.1e-61 241.1 171 70.2
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.3e-59 233.4 169 70.4
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-57 227.6 159 69.2
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 9.0e-56 221.5 193 63.7
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 7.6e-55 218.4 170 66.5
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 8.4e-54 214.9 203 53.2
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 8.4e-54 214.9 170 65.3
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 5.4e-53 212.2 130 77.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 3.8e-46 189.5 227 48.5
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.7e-44 183.3 122 71.3
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-42 176.8 157 59.9
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-42 176.0 157 59.2
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 9.6e-42 174.9 190 51.6
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-41 173.7 157 59.2
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 4.8e-41 172.6 108 78.7
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-41 172.2 173 54.9
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-40 171.4 157 59.9
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-40 169.9 157 58.0
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-39 167.2 156 57.7
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 7.6e-39 165.2 158 56.3
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 2.9e-38 163.3 174 54.6
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 4.2e-37 159.5 98 76.5
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-36 156.4 144 58.3
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 2.3e-35 153.7 99 73.7
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 7.4e-34 148.7 157 54.8
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.3e-33 147.9 307 36.5
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 6.9e-32 142.1 94 75.5
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-31 141.4 107 67.3
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-31 140.2 123 60.2
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-31 139.8 122 59.8
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-29 134.4 160 49.4
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-29 134.4 160 49.4
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.7e-28 130.2 88 69.3
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-23 114.4 156 45.5
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-23 114.0 109 56.0
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.9e-21 107.5 73 69.9
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-19 101.7 70 71.4
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-18 95.1 133 44.4
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 7.7e-15 85.5 57 66.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-14 85.1 89 51.7
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 5.0e-14 82.8 96 46.9
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-13 80.9 55 69.1
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 9.1e-08 62.0 145 34.5
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 7.7e-07 58.9 29 89.7
PRCOL_00005105 Prasinoderma coloniale HOM05D024473 ORTHO05D028792 6.5e-06 55.8 125 35.2


User provided reference genes

Program Settings