Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.8e-112 409.5 231 100.0
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.3e-96 355.9 231 84.4
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.0e-92 342.8 231 81.4
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.2e-81 307.0 233 78.5
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.2e-81 307.0 233 78.5
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 3.0e-72 275.8 233 71.7
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.1e-69 267.3 239 67.8
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 9.2e-69 264.2 238 66.4
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.2e-68 263.8 233 70.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.0e-67 260.8 238 67.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.3e-66 255.8 238 61.3
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.2e-65 253.8 239 67.8
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 8.0e-65 251.1 237 67.1
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 8.0e-65 251.1 239 64.9
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 8.0e-65 251.1 238 68.5
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.1e-64 250.8 190 77.4
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 3.1e-64 249.2 231 63.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.0e-64 248.8 240 65.4
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 6.8e-64 248.1 190 71.1
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 6.8e-64 248.1 231 63.2
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.2e-63 247.3 190 71.1
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.5e-63 246.9 246 61.4
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.5e-63 246.9 234 66.2
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.5e-63 246.9 234 66.2
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.5e-63 246.9 244 66.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 2.6e-63 246.1 231 66.7
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 5.8e-63 245.0 239 61.1
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 5.8e-63 245.0 238 66.8
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 7.5e-63 244.6 242 64.5
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 9.8e-63 244.2 204 72.5
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.3e-62 243.8 228 66.2
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.7e-62 242.3 231 66.7
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 4.9e-62 241.9 237 65.8
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 4.9e-62 241.9 228 65.4
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.9e-62 241.9 240 64.2
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 6.4e-62 241.5 228 65.4
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 8.3e-62 241.1 238 64.3
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.4e-61 240.4 238 64.3
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.9e-61 240.0 231 66.2
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 2.4e-61 239.6 236 64.8
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 2.4e-61 239.6 238 64.3
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 2.4e-61 239.6 236 64.8
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 2.4e-61 239.6 244 63.1
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 3.2e-61 239.2 184 75.5
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 3.2e-61 239.2 191 72.3
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 3.2e-61 239.2 237 59.9
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 4.1e-61 238.8 202 71.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 5.4e-61 238.4 244 58.2
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 5.4e-61 238.4 235 66.0
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 5.4e-61 238.4 169 79.9
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 7.0e-61 238.0 238 63.9
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 9.2e-61 237.7 242 61.2
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.6e-60 236.9 235 60.0
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.6e-60 236.9 234 62.4
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.6e-60 236.9 233 65.7
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.1e-60 236.5 237 64.1
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.1e-60 236.5 241 62.2
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.7e-60 236.1 234 65.0
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 4.6e-60 235.3 235 65.1
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 4.6e-60 235.3 236 66.5
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 7.8e-60 234.6 184 75.0
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.0e-59 234.2 233 64.8
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.3e-59 233.8 184 74.5
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.7e-59 233.4 248 58.5
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 3.0e-59 232.6 256 61.3
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 3.0e-59 232.6 235 64.7
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 3.9e-59 232.3 228 61.4
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.1e-59 231.9 244 57.4
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 6.6e-59 231.5 188 75.5
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 6.6e-59 231.5 199 71.4
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 8.6e-59 231.1 234 65.0
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.5e-58 230.3 239 59.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.5e-58 230.3 242 56.6
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.9e-58 229.9 189 68.3
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.5e-58 229.6 242 56.6
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 2.5e-58 229.6 249 58.6
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 5.6e-58 228.4 236 57.6
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 7.3e-58 228.0 239 60.7
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 9.5e-58 227.6 241 61.4
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.2e-57 227.3 236 61.4
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 2.1e-57 226.5 237 61.6
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 6.2e-57 224.9 182 72.5
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 8.1e-57 224.6 182 72.0
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.1e-56 224.2 241 61.0
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.4e-56 223.8 203 68.5
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.4e-56 223.8 237 61.6
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.8e-56 223.4 178 73.0
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 3.1e-56 222.6 187 71.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 4.0e-56 222.2 236 58.1
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 5.2e-56 221.9 199 63.8
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 6.8e-56 221.5 203 68.0
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 6.8e-56 221.5 180 75.6
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.6e-55 219.5 265 56.2
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.1e-53 214.2 273 49.8
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 4.3e-50 202.2 213 55.9
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 3.6e-49 199.1 184 63.0
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 4.7e-49 198.7 153 75.8
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 6.2e-49 198.4 251 51.8
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 4.0e-48 195.7 187 64.2
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 5.2e-48 195.3 182 64.8
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.4e-47 192.6 237 53.2
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 5.8e-47 191.8 182 63.7
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 9.9e-47 191.0 169 66.3
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.7e-46 190.3 250 54.8
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 3.8e-46 189.1 180 61.7
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.6e-44 183.7 193 56.0
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 3.3e-42 176.0 183 54.1
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.5e-39 167.2 130 77.7
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 9.9e-39 164.5 156 57.7
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.2e-37 159.1 238 50.4
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.5e-34 149.8 175 51.4
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 4.3e-34 149.1 195 51.8
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 5.3e-32 142.1 259 45.6
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.6e-28 129.0 103 68.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.0e-27 127.9 147 51.7
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.0e-27 126.3 103 66.0
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.5e-26 123.2 103 65.0
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 3.7e-25 119.4 123 50.4
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.8e-24 117.1 95 65.3
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 9.0e-24 114.8 148 46.6
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.3e-22 110.9 79 68.4
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.7e-22 110.5 97 73.2
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 6.4e-22 108.6 131 46.6
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 6.4e-22 108.6 153 45.1
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.4e-21 107.5 153 46.4
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 9.3e-21 104.8 195 38.5
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.6e-20 104.0 74 70.3
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.6e-20 102.4 216 39.4
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 7.9e-20 101.7 212 37.7
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.8e-19 100.5 212 36.8
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 2.3e-19 100.1 254 34.6
Ah.12g058210 Amaranthus hybridus HOM05D005346 ORTHO05D007051 7.4e-18 95.1 78 69.2
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.1e-16 91.3 65 73.8
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.7e-14 84.0 162 38.3
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 2.2e-14 83.6 134 37.3
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.6e-09 67.4 115 40.0
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.5e-07 60.8 51 62.7
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.0e-07 60.5 141 34.8
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 8.5e-06 55.1 190 31.1


User provided reference genes

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