Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 1.5e-108 396.4 225 100.0
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.4e-45 187.2 197 62.4
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.4e-45 187.2 191 61.3
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 2.6e-36 156.4 200 55.0
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 3.2e-26 122.9 185 43.2
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.1e-23 114.4 200 41.5
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 7.4e-23 111.7 200 41.0
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 7.4e-23 111.7 200 41.0
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 1.3e-22 110.9 184 42.9
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 4.8e-22 109.0 185 40.0
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 6.3e-22 108.6 189 40.7
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 1.4e-21 107.5 211 37.9
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.8e-21 107.1 207 38.6
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 2.4e-21 106.7 186 39.8
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 2.4e-21 106.7 203 39.4
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 3.1e-21 106.3 206 40.3
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 3.1e-21 106.3 199 38.7
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 9.1e-21 104.8 219 36.1
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.5e-20 104.0 213 37.6
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 1.5e-20 104.0 213 37.6
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 2.6e-20 103.2 196 38.8
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 7.7e-20 101.7 213 37.1
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.0e-19 101.3 245 34.3
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 1.7e-19 100.5 212 37.3
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 3.8e-19 99.4 194 39.2
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.8e-19 99.4 194 39.2
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 5.0e-19 99.0 214 37.4
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 1.1e-18 97.8 194 39.7
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 1.4e-18 97.4 185 41.1
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.4e-18 97.4 196 39.8
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 2.5e-18 96.7 207 37.7
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 4.2e-18 95.9 196 39.3
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 4.2e-18 95.9 220 37.3
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 4.2e-18 95.9 193 39.9
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 5.5e-18 95.5 206 37.9
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 7.2e-18 95.1 204 37.7
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 9.4e-18 94.7 190 38.4
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 9.4e-18 94.7 205 37.1
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 1.6e-17 94.0 202 37.6
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 3.6e-17 92.8 211 39.3
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 3.6e-17 92.8 195 39.0
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 4.7e-17 92.4 211 37.4
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 4.7e-17 92.4 235 34.0
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 6.1e-17 92.0 223 35.0
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 7.9e-17 91.7 214 36.0
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.4e-16 90.9 196 38.3
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 2.3e-16 90.1 220 34.1
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 2.3e-16 90.1 223 35.0
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 8.8e-16 88.2 185 38.9
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 7.4e-15 85.1 241 32.8
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 1.7e-14 84.0 209 34.4
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 2.8e-14 83.2 213 35.7
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 2.8e-14 83.2 179 36.3
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 4.8e-14 82.4 218 33.5
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 6.3e-14 82.0 247 33.6
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 1.1e-13 81.3 224 34.4
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 1.1e-13 81.3 179 34.6
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 1.8e-13 80.5 183 36.6
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 2.4e-13 80.1 224 32.1
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 2.4e-13 80.1 219 33.3
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 7.0e-13 78.6 195 38.5
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 9.1e-13 78.2 185 35.1
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.6e-12 77.4 188 34.6
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 2.6e-12 76.6 195 35.9
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 3.5e-12 76.3 209 34.0
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 5.9e-12 75.5 189 34.4
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 1.0e-11 74.7 231 32.0
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 1.3e-11 74.3 213 32.9
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 1.7e-11 73.9 190 33.2
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 2.2e-11 73.6 194 35.6
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 8.5e-11 71.6 124 36.3
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 1.1e-10 71.2 185 34.1
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 3.2e-10 69.7 229 30.6
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 4.2e-10 69.3 230 30.9
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 5.5e-10 68.9 185 34.6
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 9.4e-10 68.2 185 33.0
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 1.2e-09 67.8 195 31.3
MSTRG.15149 Avicennia marina HOM05D002166 ORTHO05D002634 2.1e-09 67.0 117 42.7
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 2.1e-09 67.0 278 29.1
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 3.6e-09 66.2 228 29.8
Prupe.4G212500 Prunus persica HOM05D002166 ORTHO05D002634 3.6e-09 66.2 121 43.8
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 3.6e-09 66.2 198 31.8
Gohir.A04G016800 Gossypium hirsutum HOM05D002166 ORTHO05D002634 4.7e-09 65.9 121 42.1
Gorai.009G438100 Gossypium raimondii HOM05D002166 ORTHO05D002634 4.7e-09 65.9 121 42.1
Peaxi162Scf01097g00414 Petunia axillaris HOM05D002166 ORTHO05D002634 4.7e-09 65.9 121 41.3
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 6.1e-09 65.5 105 44.8
Nitab4.5_0000981g0080 Nicotiana tabacum HOM05D002166 ORTHO05D002634 6.1e-09 65.5 122 40.2
PGSC0003DMG400027878 Solanum tuberosum HOM05D002166 ORTHO05D002634 6.1e-09 65.5 149 38.3
MD03G1201300 Malus domestica HOM05D002166 ORTHO05D002634 8.0e-09 65.1 121 43.0
Nitab4.5_0006428g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 8.0e-09 65.1 129 39.5
FAN21G3541 Fragaria x ananassa HOM05D002166 ORTHO05D002634 1.0e-08 64.7 121 43.0
vmacro11726 Vaccinium macrocarpon HOM05D002166 ORTHO05D002634 1.4e-08 64.3 121 41.3
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.8e-08 63.9 190 33.2
RhsimUnG0250700 Rhododendron simsii HOM05D002166 ORTHO05D002634 2.3e-08 63.5 121 39.7
CAN.G1404.1 Capsicum annuum HOM05D002166 ORTHO05D002634 3.0e-08 63.2 131 38.2
Gohir.D05G369400 Gossypium hirsutum HOM05D002166 ORTHO05D002634 3.0e-08 63.2 121 39.7
Lj8A169T85 Lonicera japonica HOM05D002166 ORTHO05D002634 3.0e-08 63.2 121 40.5
Oeu042937.1 Olea europaea HOM05D002166 ORTHO05D002634 3.0e-08 63.2 127 40.2
Solyc12g005010.2 Solanum lycopersicum HOM05D002166 ORTHO05D002634 3.0e-08 63.2 121 39.7
Sopen12g001020 Solanum pennellii HOM05D002166 ORTHO05D002634 3.0e-08 63.2 121 39.7
FAN25G0402 Fragaria x ananassa HOM05D002166 ORTHO05D002634 4.0e-08 62.8 121 42.1
Potri.011G090100 Populus trichocarpa HOM05D002166 ORTHO05D002634 4.0e-08 62.8 121 39.7
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 5.2e-08 62.4 194 30.4
Zm00001eb431290 Zea mays HOM05D002166 ORTHO05D002634 5.2e-08 62.4 139 35.3
arahy.Tifrunner.gnm1.ann1.R34EKV Arachis hypogaea HOM05D002166 ORTHO05D002634 8.8e-08 61.6 115 41.7
arahy.Tifrunner.gnm1.ann1.WSU996 Arachis hypogaea HOM05D002166 ORTHO05D002634 8.8e-08 61.6 115 41.7
Carub.0003s2030 Capsella rubella HOM05D002166 ORTHO05D002634 8.8e-08 61.6 121 41.3
Zm00001eb150970 Zea mays HOM05D002166 ORTHO05D002634 8.8e-08 61.6 159 36.5
FvH4_3g22650 Fragaria vesca HOM05D002166 ORTHO05D002634 1.1e-07 61.2 121 42.1
FAN16G1047 Fragaria x ananassa HOM05D002166 ORTHO05D002634 1.1e-07 61.2 121 42.1
QL08p010329 Quercus lobata HOM05D002166 ORTHO05D002634 1.1e-07 61.2 121 40.5
Glyma.02G290700 Glycine max HOM05D002166 ORTHO05D002634 1.5e-07 60.8 121 41.3
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 1.5e-07 60.8 105 41.0
PGR119G1567 Punica granatum HOM05D002319 ORTHO05D002374 1.5e-07 60.8 118 39.8
CDE02G2372 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 2.0e-07 60.5 121 39.7
Zm00001eb070190 Zea mays HOM05D002166 ORTHO05D002634 2.0e-07 60.5 138 34.8
Sc16g0006060 Simmondsia chinensis HOM05D002166 ORTHO05D002634 2.6e-07 60.1 122 39.3
TWI38G0482 Tripterygium wilfordii HOM05D002166 ORTHO05D002634 2.6e-07 60.1 121 39.7
Aqoxy5G02981 Aquilegia oxysepala HOM05D002319 ORTHO05D002374 3.3e-07 59.7 111 39.6
Sabra11G0086400 Salix brachista HOM05D002166 ORTHO05D002634 3.3e-07 59.7 136 36.0
Zm00001eb369610 Zea mays HOM05D002166 ORTHO05D002634 3.3e-07 59.7 153 36.6
Duzib170G0116 Durio zibethinus HOM05D002166 ORTHO05D002634 4.4e-07 59.3 118 39.8
Pp3c9_16460 Physcomitrium patens HOM05D002319 ORTHO05D002374 4.4e-07 59.3 109 37.6
Potri.004G199500 Populus trichocarpa HOM05D002319 ORTHO05D002374 5.7e-07 58.9 118 39.0
TWI79G0379 Tripterygium wilfordii HOM05D002319 ORTHO05D002374 5.7e-07 58.9 118 38.1
Actinidia24233 Actinidia chinensis HOM05D002319 ORTHO05D002374 7.5e-07 58.5 114 38.6
MSTRG.14434 Avicennia marina HOM05D002166 ORTHO05D002634 7.5e-07 58.5 137 36.5
DCAR_022561 Daucus carota HOM05D002166 ORTHO05D002634 7.5e-07 58.5 137 37.2
Gohir.A11G278700 Gossypium hirsutum HOM05D002166 ORTHO05D002634 7.5e-07 58.5 121 38.8
HanXRQChr08g0233861 Helianthus annuus HOM05D002166 ORTHO05D002634 7.5e-07 58.5 123 39.8
RcHm_v2.0_Chr5g0047011 Rosa chinensis HOM05D002319 ORTHO05D002374 7.5e-07 58.5 156 33.3
ECA246G2514 Erigeron canadensis HOM05D002166 ORTHO05D002634 9.7e-07 58.2 121 39.7
Gohir.A04G060700 Gossypium hirsutum HOM05D002319 ORTHO05D002374 1.3e-06 57.8 115 38.3
Gohir.D04G095900 Gossypium hirsutum HOM05D002319 ORTHO05D002374 1.3e-06 57.8 115 38.3
Gorai.009G398800 Gossypium raimondii HOM05D002319 ORTHO05D002374 1.3e-06 57.8 115 38.3
CARHR096000 Cardamine hirsuta HOM05D002166 ORTHO05D002634 1.7e-06 57.4 115 40.0
Lsat_1_v5_gn_5_4021 Lactuca sativa HOM05D002166 ORTHO05D002634 1.7e-06 57.4 121 38.8
Duzib268G1828 Durio zibethinus HOM05D002166 ORTHO05D002634 2.2e-06 57.0 121 38.8
HanXRQChr05g0159381 Helianthus annuus HOM05D002166 ORTHO05D002634 2.2e-06 57.0 123 39.0
Os04g0625000 Oryza sativa ssp. japonica HOM05D002166 ORTHO05D002634 2.2e-06 57.0 131 36.6
Thecc.05G097100 Theobroma cacao HOM05D002319 ORTHO05D002374 2.2e-06 57.0 118 37.3
MD11G1170000 Malus domestica HOM05D002319 ORTHO05D002374 2.8e-06 56.6 136 33.8
Nn6g34794 Nelumbo nucifera HOM05D002319 ORTHO05D002374 2.8e-06 56.6 132 33.3
RcHm_v2.0_Chr5g0039421 Rosa chinensis HOM05D002166 ORTHO05D002634 2.8e-06 56.6 122 40.2
Sp3g18380 Schrenkiella parvula HOM05D002166 ORTHO05D002634 2.8e-06 56.6 121 38.8
TWI31G1038 Tripterygium wilfordii HOM05D002319 ORTHO05D002374 2.8e-06 56.6 114 39.5
TAR636G1826 Trochodendron aralioides HOM05D002319 ORTHO05D002374 2.8e-06 56.6 114 36.8
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 3.7e-06 56.2 99 43.4
Dinv13887 Davidia involucrata HOM05D002166 ORTHO05D002634 3.7e-06 56.2 118 39.0
FAN25G0943 Fragaria x ananassa HOM05D002319 ORTHO05D002374 3.7e-06 56.2 118 39.0
Potri.009G160900 Populus trichocarpa HOM05D002319 ORTHO05D002374 3.7e-06 56.2 118 38.1
Sopen02g025210 Solanum pennellii HOM05D002166 ORTHO05D002634 3.7e-06 56.2 118 38.1
Thecc.06G219700 Theobroma cacao HOM05D002166 ORTHO05D002634 3.7e-06 56.2 118 39.8
Aqoxy1G02169 Aquilegia oxysepala HOM05D002166 ORTHO05D002634 4.8e-06 55.8 122 38.5
CANSAT11G1162 Cannabis sativa HOM05D002166 ORTHO05D002634 4.8e-06 55.8 121 39.7
MELO3C025366.2 Cucumis melo HOM05D002166 ORTHO05D002634 4.8e-06 55.8 121 39.7
Eucgr.J00528 Eucalyptus grandis HOM05D002319 ORTHO05D002374 4.8e-06 55.8 118 35.6
Glyma.13G205100 Glycine max HOM05D002166 ORTHO05D002634 4.8e-06 55.8 146 34.9
Sed0016610 Sechium edule HOM05D002166 ORTHO05D002634 4.8e-06 55.8 121 38.8
SMO367G0664 Selaginella moellendorffii HOM05D002166 ORTHO05D002374 4.8e-06 55.8 114 38.6
FvH4_3g25790 Fragaria vesca HOM05D002319 ORTHO05D002374 6.3e-06 55.5 118 38.1
FAN11G1280 Fragaria x ananassa HOM05D002319 ORTHO05D002374 6.3e-06 55.5 118 38.1
Hma1.2p1_0673F.1_g201340 Hydrangea macrophylla HOM05D002166 ORTHO05D002634 6.3e-06 55.5 121 36.4
Nn1g03540 Nelumbo nucifera HOM05D002166 ORTHO05D002634 6.3e-06 55.5 115 39.1
Zm00001eb298080 Zea mays HOM05D002166 ORTHO05D002634 6.3e-06 55.5 158 32.3
CSS0030432 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 8.2e-06 55.1 122 38.5
Cpa.g.sc195.33 Carica papaya HOM05D002319 ORTHO05D002374 8.2e-06 55.1 148 33.1
FAN21G1297 Fragaria x ananassa HOM05D002319 ORTHO05D002374 8.2e-06 55.1 118 38.1
Glyma.14G024000 Glycine max HOM05D002166 ORTHO05D002634 8.2e-06 55.1 122 37.7
MD11G1218700 Malus domestica HOM05D002166 ORTHO05D002634 8.2e-06 55.1 121 38.0
Nitab4.5_0023753g0010 Nicotiana tabacum HOM05D002319 ORTHO05D002374 8.2e-06 55.1 113 36.3
Sabra16G0235500 Salix brachista HOM05D002166 ORTHO05D002634 8.2e-06 55.1 115 40.0


User provided reference genes

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