Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12251 Beta vulgaris HOM05D002587 ORTHO05D002778 6.2e-70 267.3 131 100.0
EL10Ac6g14925 Beta vulgaris HOM05D002587 ORTHO05D002778 1.4e-21 106.7 51 96.1
EL10Ac8g19021 Beta vulgaris HOM05D002587 ORTHO05D002778 8.4e-19 97.4 99 57.6
AUR62003168 Chenopodium quinoa HOM05D002587 ORTHO05D002778 1.6e-17 93.2 164 40.2
AUR62007986 Chenopodium quinoa HOM05D002587 ORTHO05D002778 2.1e-17 92.8 164 40.2
Haze_15110 Corylus avellana HOM05D002587 ORTHO05D002778 3.5e-17 92.0 160 38.1
Duzib187G0654 Durio zibethinus HOM05D002587 ORTHO05D002778 7.9e-17 90.9 116 46.6
MD02G1150600 Malus domestica HOM05D002587 ORTHO05D002778 1.0e-16 90.5 150 40.7
CANSAT01G2790 Cannabis sativa HOM05D002587 ORTHO05D002778 1.3e-16 90.1 151 38.4
Hund14145 Selenicereus undatus HOM05D002587 ORTHO05D002778 1.3e-16 90.1 157 41.4
Ah.03g139460 Amaranthus hybridus HOM05D002587 ORTHO05D002778 2.3e-16 89.4 121 47.1
Gohir.D03G015700 Gossypium hirsutum HOM05D002587 ORTHO05D002778 3.0e-16 89.0 153 38.6
Gorai.003G015900 Gossypium raimondii HOM05D002587 ORTHO05D002778 3.0e-16 89.0 153 38.6
Thecc.01G038100 Theobroma cacao HOM05D002587 ORTHO05D002778 5.1e-16 88.2 114 47.4
Atru.chr3.552 Acer truncatum HOM05D002587 ORTHO05D002778 6.7e-16 87.8 162 35.2
Dinv26820 Davidia involucrata HOM05D002587 ORTHO05D002778 6.7e-16 87.8 107 46.7
CSS0035416 Camellia sinensis var. sinensis HOM05D002587 ORTHO05D002778 8.7e-16 87.4 115 42.6
Cfa004290 Carpinus fangiana HOM05D002587 ORTHO05D002778 8.7e-16 87.4 149 39.6
Hund16585 Selenicereus undatus HOM05D002587 ORTHO05D002778 8.7e-16 87.4 114 47.4
Gohir.A02G164400 Gossypium hirsutum HOM05D002587 ORTHO05D002778 1.1e-15 87.0 153 37.9
FvH4_1g13540 Fragaria vesca HOM05D002587 ORTHO05D002778 1.5e-15 86.7 146 37.7
FAN26G2804 Fragaria x ananassa HOM05D002587 ORTHO05D002778 1.5e-15 86.7 146 37.7
COL.COLO4_22102 Corchorus olitorius HOM05D002587 ORTHO05D002778 1.9e-15 86.3 116 45.7
Prupe.7G152400 Prunus persica HOM05D002587 ORTHO05D002778 1.9e-15 86.3 112 45.5
FAN23G2744 Fragaria x ananassa HOM05D002587 ORTHO05D002778 2.5e-15 85.9 146 38.4
Duzib147G0895 Durio zibethinus HOM05D002587 ORTHO05D002778 4.3e-15 85.1 116 44.8
Nn5g29554 Nelumbo nucifera HOM05D002587 ORTHO05D002778 5.7e-15 84.7 116 43.1
Cpa.g.sc544.4 Carica papaya HOM05D002587 ORTHO05D002778 9.6e-15 84.0 114 45.6
Lalb_Chr09g0322531 Lupinus albus HOM05D002587 ORTHO05D002778 2.1e-14 82.8 145 39.3
Sc03g0000800 Simmondsia chinensis HOM05D002587 ORTHO05D002778 2.1e-14 82.8 114 47.4
Potri.007G027700 Populus trichocarpa HOM05D002587 ORTHO05D002778 2.8e-14 82.4 150 38.7
CiPaw.02G015900 Carya illinoinensis HOM05D002587 ORTHO05D002778 4.8e-14 81.6 100 46.0
FAN19G2698 Fragaria x ananassa HOM05D002587 ORTHO05D002778 4.8e-14 81.6 112 42.0
RcHm_v2.0_Chr2g0101931 Rosa chinensis HOM05D002587 ORTHO05D002778 4.8e-14 81.6 112 42.0
TAR376G0555 Trochodendron aralioides HOM05D002587 ORTHO05D002778 4.8e-14 81.6 114 43.0
Lj2g0021184 Lotus japonicus HOM05D002587 ORTHO05D002778 8.2e-14 80.9 150 38.0
MD15G1265200 Malus domestica HOM05D002587 ORTHO05D002778 8.2e-14 80.9 112 43.8
TAR628G0968 Trochodendron aralioides HOM05D002587 ORTHO05D002778 8.2e-14 80.9 114 43.0
TAR628G1152 Trochodendron aralioides HOM05D002587 ORTHO05D002778 8.2e-14 80.9 114 43.0
CiPaw.01G036000 Carya illinoinensis HOM05D002587 ORTHO05D002778 1.1e-13 80.5 110 44.5
Gohir.D11G191900 Gossypium hirsutum HOM05D002587 ORTHO05D002778 1.4e-13 80.1 116 43.1
TWI73G1255 Tripterygium wilfordii HOM05D002587 ORTHO05D002778 1.8e-13 79.7 124 41.9
Lj4A199T82 Lonicera japonica HOM05D002587 ORTHO05D002778 2.4e-13 79.3 110 42.7
CSS0018931 Camellia sinensis var. sinensis HOM05D002587 ORTHO05D002778 4.1e-13 78.6 105 41.9
Gohir.A11G185500 Gossypium hirsutum HOM05D002587 ORTHO05D002778 4.1e-13 78.6 114 43.0
Gorai.007G204600 Gossypium raimondii HOM05D002587 ORTHO05D002778 4.1e-13 78.6 114 43.0
MBI16_g37703_MAGBIO Magnolia biondii HOM05D002587 ORTHO05D002778 4.1e-13 78.6 114 43.0
Ca_00388_v3 Cicer arietinum L. HOM05D002587 ORTHO05D002778 5.3e-13 78.2 114 43.9
Duzib264G0162 Durio zibethinus HOM05D002587 ORTHO05D002778 6.9e-13 77.8 116 42.2
Sabra05G0102600 Salix brachista HOM05D002587 ORTHO05D002778 6.9e-13 77.8 150 36.7
Aqoxy6G01070 Aquilegia oxysepala HOM05D002587 ORTHO05D002778 9.0e-13 77.4 114 40.4
QL06p045626 Quercus lobata HOM05D002587 ORTHO05D002778 9.0e-13 77.4 149 36.9
THA.LOC104826929 Tarenaya hassleriana HOM05D002587 ORTHO05D002778 9.0e-13 77.4 127 37.8
TWI09G1216 Tripterygium wilfordii HOM05D000525 ORTHO05D002778 9.0e-13 77.4 115 42.6
Medtr5g019900 Medicago truncatula HOM05D002587 ORTHO05D002778 1.2e-12 77.0 150 36.7
Potri.005G125000 Populus trichocarpa HOM05D002587 ORTHO05D002778 1.2e-12 77.0 127 38.6
Actinidia36548 Actinidia chinensis HOM05D002587 ORTHO05D002778 1.5e-12 76.6 102 42.2
Ciclev10027139m.g Citrus clementina HOM05D002587 ORTHO05D002778 2.0e-12 76.3 133 36.8
arahy.Tifrunner.gnm1.ann1.TI5GXM Arachis hypogaea HOM05D002587 ORTHO05D002778 2.6e-12 75.9 153 37.3
Manes.01G133800 Manihot esculenta HOM05D002587 ORTHO05D002778 2.6e-12 75.9 125 37.6
THA.LOC104821281 Tarenaya hassleriana HOM05D002587 ORTHO05D002778 2.6e-12 75.9 127 37.0
Manes.02G092100 Manihot esculenta HOM05D002587 ORTHO05D002778 3.4e-12 75.5 125 39.2
Glyma.11G066800 Glycine max HOM05D002587 ORTHO05D002778 4.5e-12 75.1 150 36.7
Lj2C450T6 Lonicera japonica HOM05D002587 ORTHO05D002778 4.5e-12 75.1 98 46.9
TWI53G0626 Tripterygium wilfordii HOM05D002587 ORTHO05D002778 5.9e-12 74.7 112 42.9
Lalb_Chr05g0212891 Lupinus albus HOM05D002587 ORTHO05D002778 1.0e-11 73.9 148 36.5
Glyma.01G174700 Glycine max HOM05D002587 ORTHO05D002778 2.2e-11 72.8 149 35.6
Psat2g160760 Pisum sativum HOM05D002587 ORTHO05D002778 2.2e-11 72.8 127 37.8
Nn1g05054 Nelumbo nucifera HOM05D002587 ORTHO05D002778 2.9e-11 72.4 120 38.3
Eucgr.H01264 Eucalyptus grandis HOM05D002587 ORTHO05D002778 3.8e-11 72.0 117 43.6
Phvul.002G028800 Phaseolus vulgaris HOM05D002587 ORTHO05D002778 3.8e-11 72.0 150 34.0
Dinv39409 Davidia involucrata HOM05D002587 ORTHO05D002778 5.0e-11 71.6 101 40.6
PGSC0003DMG400017789 Solanum tuberosum HOM05D002587 ORTHO05D002778 5.0e-11 71.6 137 38.7
PSO541G3587 Papaver somniferum HOM05D002587 ORTHO05D002778 6.5e-11 71.2 111 41.4
PSO675G7251 Papaver somniferum HOM05D002587 ORTHO05D002778 6.5e-11 71.2 111 41.4
Hma1.2p1_0717F.1_g208230 Hydrangea macrophylla HOM05D002587 ORTHO05D002778 8.4e-11 70.9 107 43.9
vmacro12722 Vaccinium macrocarpon HOM05D002587 ORTHO05D002778 8.4e-11 70.9 98 42.9
VMungo1215G3241 Vigna mungo HOM05D002587 ORTHO05D002778 8.4e-11 70.9 150 34.7
TPR.G28683 Trifolium pratense HOM05D002587 ORTHO05D002778 1.1e-10 70.5 112 40.2
CsaV3_6G046150 Cucumis sativus L. HOM05D002587 ORTHO05D002778 4.2e-10 68.6 127 38.6
CSS0003250 Camellia sinensis var. sinensis HOM05D002587 ORTHO05D002778 5.5e-10 68.2 112 39.3
MELO3C007818.2 Cucumis melo HOM05D002587 ORTHO05D002778 5.5e-10 68.2 127 38.6
GSVIVG01018986001 Vitis vinifera HOM05D002587 ORTHO05D002778 5.5e-10 68.2 114 39.5
Dinv36070 Davidia involucrata HOM05D002587 ORTHO05D002778 7.2e-10 67.8 129 33.3
Sopen03g006870 Solanum pennellii HOM05D002587 ORTHO05D002778 7.2e-10 67.8 116 41.4
MD15G1031100 Malus domestica HOM05D002587 ORTHO05D002778 9.3e-10 67.4 119 37.8
Nitab4.5_0000628g0010 Nicotiana tabacum HOM05D002587 ORTHO05D002778 9.3e-10 67.4 98 42.9
Prupe.1G380800 Prunus persica HOM05D002587 ORTHO05D002778 9.3e-10 67.4 116 41.4
PGR119G2568 Punica granatum HOM05D002587 ORTHO05D002778 9.3e-10 67.4 115 37.4
Solyc03g034090.3 Solanum lycopersicum HOM05D002587 ORTHO05D002778 1.6e-09 66.6 102 43.1
Carub.0007s0366 Capsella rubella HOM05D002587 ORTHO05D002778 2.1e-09 66.2 154 33.1
Nitab4.5_0001038g0120 Nicotiana tabacum HOM05D002587 ORTHO05D002778 2.7e-09 65.9 111 36.0
CAN.G1028.4 Capsicum annuum HOM05D002587 ORTHO05D002778 3.5e-09 65.5 116 37.1
ClCG01G019440 Citrullus lanatus HOM05D002587 ORTHO05D002778 3.5e-09 65.5 113 39.8
MD08G1034200 Malus domestica HOM05D002587 ORTHO05D002778 3.5e-09 65.5 117 37.6
Solyc02g085480.4 Solanum lycopersicum HOM05D002587 ORTHO05D002778 4.6e-09 65.1 127 32.3
Sopen02g030160 Solanum pennellii HOM05D002587 ORTHO05D002778 4.6e-09 65.1 127 32.3
Nitab4.5_0001466g0090 Nicotiana tabacum HOM05D002587 ORTHO05D002778 6.1e-09 64.7 112 34.8
THA.LOC104807445 Tarenaya hassleriana HOM05D002587 ORTHO05D002778 6.1e-09 64.7 110 40.0
Aa31LG6G13460 Aethionema arabicum HOM05D002587 ORTHO05D002778 7.9e-09 64.3 110 40.0
Hma1.2p1_0203F.1_g086430 Hydrangea macrophylla HOM05D002587 ORTHO05D002778 7.9e-09 64.3 129 34.9
Sed0012521 Sechium edule HOM05D002587 ORTHO05D002778 7.9e-09 64.3 127 37.0
Aa31LG1G15290 Aethionema arabicum HOM05D002587 ORTHO05D002778 1.0e-08 63.9 113 34.5
AL8G43240 Arabidopsis lyrata HOM05D002587 ORTHO05D002778 1.0e-08 63.9 114 35.1
AT5G65650 Arabidopsis thaliana HOM05D002587 ORTHO05D002778 1.0e-08 63.9 113 36.3
Thhalv10004972m.g Eutrema salsugineum HOM05D002587 ORTHO05D002778 1.0e-08 63.9 113 35.4
Gohir.D06G008000 Gossypium hirsutum HOM05D002587 ORTHO05D002778 1.3e-08 63.5 113 37.2
Gorai.010G010700 Gossypium raimondii HOM05D002587 ORTHO05D002778 1.3e-08 63.5 113 37.2
AT4G36660 Arabidopsis thaliana HOM05D002587 ORTHO05D002778 1.8e-08 63.2 110 40.9
CARHR280970 Cardamine hirsuta HOM05D002587 ORTHO05D002778 1.8e-08 63.2 113 35.4
Hma1.2p1_0581F.1_g182980 Hydrangea macrophylla HOM05D002587 ORTHO05D002778 1.8e-08 63.2 115 34.8
Cc07_g09320 Coffea canephora HOM05D002587 ORTHO05D002778 2.3e-08 62.8 99 43.4
COL.COLO4_26332 Corchorus olitorius HOM05D002587 ORTHO05D002778 3.0e-08 62.4 112 35.7
Oeu038418.1 Olea europaea HOM05D002587 ORTHO05D002778 3.0e-08 62.4 98 38.8
AL7G14350 Arabidopsis lyrata HOM05D002587 ORTHO05D002778 3.9e-08 62.0 110 40.0
BcaC06g34738 Brassica carinata HOM05D002587 ORTHO05D002778 3.9e-08 62.0 113 34.5
C07p25060 Brassica napus HOM05D002587 ORTHO05D002778 3.9e-08 62.0 113 34.5
BraA07t29447Z Brassica rapa HOM05D002587 ORTHO05D002778 3.9e-08 62.0 113 34.5
CARHR245010 Cardamine hirsuta HOM05D002587 ORTHO05D002778 3.9e-08 62.0 110 39.1
Gohir.A06G010600 Gossypium hirsutum HOM05D002587 ORTHO05D002778 3.9e-08 62.0 113 37.2
PGSC0003DMG400014898 Solanum tuberosum HOM05D002587 ORTHO05D002778 3.9e-08 62.0 112 34.8
ATR0733G200 Amborella trichopoda HOM05D002587 ORTHO05D002778 5.1e-08 61.6 118 37.3
A07p17200 Brassica napus HOM05D002587 ORTHO05D002778 5.1e-08 61.6 113 33.6
CDE04G0045 Ceratophyllum demersum HOM05D002587 ORTHO05D002778 5.1e-08 61.6 93 39.8
CAN.G358.111 Capsicum annuum HOM05D002587 ORTHO05D002778 6.7e-08 61.2 98 36.7
Sp2g29950 Schrenkiella parvula HOM05D002587 ORTHO05D002778 6.7e-08 61.2 113 34.5
Manes.05G161100 Manihot esculenta HOM05D002587 ORTHO05D002778 8.7e-08 60.8 115 34.8
vmacro21633 Vaccinium macrocarpon HOM05D002587 ORTHO05D002778 8.7e-08 60.8 108 34.3
BcaB02g09995 Brassica carinata HOM05D002587 ORTHO05D002778 1.1e-07 60.5 113 33.6
Thhalv10026362m.g Eutrema salsugineum HOM05D002587 ORTHO05D002778 1.1e-07 60.5 110 39.1
Lsat_1_v5_gn_2_76660 Lactuca sativa HOM05D002587 ORTHO05D002778 1.1e-07 60.5 116 38.8
Lsat_1_v5_gn_5_29201 Lactuca sativa HOM05D002587 ORTHO05D002778 1.1e-07 60.5 113 38.9
Sabra07G0024100 Salix brachista HOM05D006781 ORTHO05D008500 1.1e-07 60.5 85 40.0
EL10Ac6g14932 Beta vulgaris HOM05D002587 ORTHO05D002778 1.5e-07 60.1 90 42.2
BcaB04g20105 Brassica carinata HOM05D002587 ORTHO05D002778 1.5e-07 60.1 89 38.2
Nitab4.5_0001279g0010 Nicotiana tabacum HOM05D002587 ORTHO05D002778 1.5e-07 60.1 97 37.1
Peaxi162Scf00515g00315 Petunia axillaris HOM05D002587 ORTHO05D002778 1.9e-07 59.7 98 38.8
CDE07G0861 Ceratophyllum demersum HOM05D002587 ORTHO05D002778 2.5e-07 59.3 93 38.7
Haze_17981 Corylus avellana HOM05D002587 ORTHO05D002778 2.5e-07 59.3 110 36.4
QL02p008016 Quercus lobata HOM05D002587 ORTHO05D002778 2.5e-07 59.3 110 35.5
BolC7t43037H Brassica oleracea HOM05D002587 ORTHO05D002778 3.3e-07 58.9 100 36.0
FvH4_2g39930 Fragaria vesca HOM05D002587 ORTHO05D002778 4.3e-07 58.5 131 35.1
HanXRQChr09g0262101 Helianthus annuus HOM05D002587 ORTHO05D002778 4.3e-07 58.5 124 36.3
GSVIVG01009694001 Vitis vinifera HOM05D002587 ORTHO05D002778 4.3e-07 58.5 114 36.8
ECA238G2451 Erigeron canadensis HOM05D002587 ORTHO05D002778 5.7e-07 58.2 119 38.7
HanXRQChr05g0151861 Helianthus annuus HOM05D002587 ORTHO05D002778 5.7e-07 58.2 113 37.2
FAN27G1553 Fragaria x ananassa HOM05D002587 ORTHO05D002778 9.7e-07 57.4 131 34.4
RcHm_v2.0_Chr6g0300851 Rosa chinensis HOM05D002587 ORTHO05D002778 9.7e-07 57.4 137 32.8
Cfa018142 Carpinus fangiana HOM05D002587 ORTHO05D002778 1.3e-06 57.0 110 34.5
Duzib116G0079 Durio zibethinus HOM05D002587 ORTHO05D002778 1.3e-06 57.0 109 35.8
TWI56G0895 Tripterygium wilfordii HOM05D002587 ORTHO05D002778 1.6e-06 56.6 112 37.5
SGA_v2.0_scaffold24G10233 Striga asiatica HOM05D002587 ORTHO05D002778 2.2e-06 56.2 128 35.2
Sed0016352 Sechium edule HOM05D002587 ORTHO05D002778 2.8e-06 55.8 115 34.8
HPP92_007729 Vanilla planifolia HOM05D002587 ORTHO05D002778 2.8e-06 55.8 98 32.7
FAN15G3285 Fragaria x ananassa HOM05D002587 ORTHO05D002778 3.7e-06 55.5 120 35.0
Gohir.A05G194900 Gossypium hirsutum HOM05D002587 ORTHO05D002778 3.7e-06 55.5 116 33.6
HPP92_023604 Vanilla planifolia HOM05D002587 ORTHO05D002778 3.7e-06 55.5 96 34.4
Gohir.D05G198100 Gossypium hirsutum HOM05D002587 ORTHO05D002778 4.8e-06 55.1 116 32.8
Gorai.009G203200 Gossypium raimondii HOM05D002587 ORTHO05D002778 4.8e-06 55.1 116 32.8
Thecc.08G025100 Theobroma cacao HOM05D002587 ORTHO05D002778 6.3e-06 54.7 108 34.3
Atru.chr13.499 Acer truncatum HOM05D002587 ORTHO05D002778 8.2e-06 54.3 107 33.6
BraA03t15505Z Brassica rapa HOM05D002587 ORTHO05D002778 8.2e-06 54.3 136 31.6
Lsat_1_v5_gn_4_150840 Lactuca sativa HOM05D002587 ORTHO05D002778 8.2e-06 54.3 130 33.8


User provided reference genes

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