Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12234 Beta vulgaris HOM05D001033 ORTHO05D002045 6.9e-43 176.8 83 100.0
EL10Ac5g11543 Beta vulgaris HOM05D001033 ORTHO05D002045 8.0e-15 83.6 59 76.3
EL10Ac9g22560 Beta vulgaris HOM05D001033 ORTHO05D002045 8.0e-15 83.6 59 76.3
Oeu029406.1 Olea europaea HOM05D001033 ORTHO05D002045 8.0e-15 83.6 79 58.2
AUR62009167 Chenopodium quinoa HOM05D001033 ORTHO05D002045 1.0e-14 83.2 79 58.2
AUR62022056 Chenopodium quinoa HOM05D001033 ORTHO05D002045 1.0e-14 83.2 79 58.2
CANSAT11G1663 Cannabis sativa HOM05D001033 ORTHO05D002045 1.8e-14 82.4 79 58.2
Sed0000213 Sechium edule HOM05D001033 ORTHO05D002045 1.8e-14 82.4 79 57.0
Sed0018803 Sechium edule HOM05D001033 ORTHO05D002045 1.8e-14 82.4 79 57.0
Atru.chr7.1038 Acer truncatum HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
Aa31LG3G15430 Aethionema arabicum HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
Ah.10g034470 Amaranthus hybridus HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
MSTRG.11667 Avicennia marina HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
EL10Ac2g03916 Beta vulgaris HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
EL10Ac5g11542 Beta vulgaris HOM05D001033 ORTHO05D002045 2.3e-14 82.0 58 75.9
Carub.0006s1030 Capsella rubella HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
CiPaw.15G040400 Carya illinoinensis HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
ECA240G1938 Erigeron canadensis HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
Migut.A00145 Erythranthe guttata HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
Glyma.06G051400 Glycine max HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
HanXRQChr03g0079051 Helianthus annuus HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
HanXRQChr13g0410711 Helianthus annuus HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
Lsat_1_v5_gn_5_48820 Lactuca sativa HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
Hund00755 Selenicereus undatus HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
SGA_v2.0_scaffold88G27222 Striga asiatica HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
THA.LOC104799172 Tarenaya hassleriana HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
THA.LOC104811248 Tarenaya hassleriana HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
unitig_88.g27684 Utricularia gibba HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
VMungo1309G1193 Vigna mungo HOM05D001033 ORTHO05D002045 2.3e-14 82.0 79 57.0
Glyma.04G050600 Glycine max HOM05D001033 ORTHO05D002045 3.0e-14 81.6 79 55.7
Phvul.009G076900 Phaseolus vulgaris HOM05D001033 ORTHO05D002045 3.0e-14 81.6 79 55.7
CSS0046399 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D002045 4.0e-14 81.3 79 55.7
CSS0046941 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D002045 4.0e-14 81.3 79 55.7
CANSAT25G0039 Cannabis sativa HOM05D001033 ORTHO05D002045 4.0e-14 81.3 79 57.0
Dinv23430 Davidia involucrata HOM05D001033 ORTHO05D002045 4.0e-14 81.3 79 55.7
Dinv27974 Davidia involucrata HOM05D001033 ORTHO05D002045 4.0e-14 81.3 79 55.7
Peaxi162Scf00038g01323 Petunia axillaris HOM05D001033 ORTHO05D002045 4.0e-14 81.3 79 55.7
Sc23g0005560 Simmondsia chinensis HOM05D001033 ORTHO05D002045 4.0e-14 81.3 79 55.7
Aqoxy7G04071 Aquilegia oxysepala HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
CAN.G309.55 Capsicum annuum HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 58.2
COL.COLO4_21038 Corchorus olitorius HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
Duzib150G0652 Durio zibethinus HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
Os01g0720300 Oryza sativa ssp. japonica HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
TWI32G1281 Tripterygium wilfordii HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
TWI34G1483 Tripterygium wilfordii HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
unitig_0.g2564 Utricularia gibba HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
Zm00001eb154640 Zea mays HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
Zm00001eb361610 Zea mays HOM05D001033 ORTHO05D002045 5.2e-14 80.9 79 55.7
CARHR201420 Cardamine hirsuta HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
Ca_15867_v3 Cicer arietinum L. HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
Lj1g0008257 Lotus japonicus HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
Manes.16G078900 Manihot esculenta HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
Medtr3g104310 Medicago truncatula HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
Potri.006G231701 Populus trichocarpa HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
Sabra06G0179700 Salix brachista HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
Hund03349 Selenicereus undatus HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
TPR.G3591 Trifolium pratense HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
GSVIVG01035355001 Vitis vinifera HOM05D001033 ORTHO05D002045 6.8e-14 80.5 79 55.7
AL6G22520 Arabidopsis lyrata HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
AT5G11770 Arabidopsis thaliana HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
BcaB01g05455 Brassica carinata HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
BcaC04g19196 Brassica carinata HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
BcaNung02654 Brassica carinata HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
A02p01190 Brassica napus HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
A03p05190 Brassica napus HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
A10p25970 Brassica napus HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
C03p05990 Brassica napus HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
C09p65050 Brassica napus HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
BolC3t13110H Brassica oleracea HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
BolC9t59333H Brassica oleracea HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
BraA02t05098Z Brassica rapa HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
BraA03t09858Z Brassica rapa HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
BraA10t44659Z Brassica rapa HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
Thhalv10014642m.g Eutrema salsugineum HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
QL02p001432 Quercus lobata HOM05D001033 ORTHO05D002045 8.8e-14 80.1 78 55.1
Sp6g31830 Schrenkiella parvula HOM05D001033 ORTHO05D002045 8.8e-14 80.1 79 55.7
Cc04_g02140 Coffea canephora HOM05D001033 ORTHO05D002045 1.2e-13 79.7 79 54.4
Duzib168G0013 Durio zibethinus HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
Duzib187G1343 Durio zibethinus HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
Gohir.A06G088400 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
Gohir.A07G022136 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
Gohir.D06G088300 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
Gohir.D07G022800 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
Gorai.001G023500 Gossypium raimondii HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
Gorai.010G102000 Gossypium raimondii HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
Manes.03G046900 Manihot esculenta HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 55.7
Manes.11G028300 Manihot esculenta HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 53.2
HPP92_008639 Vanilla planifolia HOM05D001033 ORTHO05D002045 1.5e-13 79.3 79 54.4
CAN.G1668.13 Capsicum annuum HOM05D001033 ORTHO05D002045 2.0e-13 79.0 79 54.4
Cc08_g10410 Coffea canephora HOM05D001033 ORTHO05D002045 2.0e-13 79.0 79 54.4
SalBow1G7001 Salvia bowleyana HOM05D001033 ORTHO05D002045 2.0e-13 79.0 79 54.4
Thecc.09G052200 Theobroma cacao HOM05D001033 ORTHO05D002045 2.0e-13 79.0 79 54.4
Solyc11g070030.2 Solanum lycopersicum HOM05D001033 ORTHO05D002045 2.6e-13 78.6 79 55.7
Sopen11g028710 Solanum pennellii HOM05D001033 ORTHO05D002045 2.6e-13 78.6 79 55.7
ClCG05G017770 Citrullus lanatus HOM05D001033 ORTHO05D002045 3.4e-13 78.2 79 54.4
MELO3C016861.2 Cucumis melo HOM05D001033 ORTHO05D002045 3.4e-13 78.2 79 54.4
CsaV3_4G035540 Cucumis sativus L. HOM05D001033 ORTHO05D002045 3.4e-13 78.2 79 54.4
DCAR_004436 Daucus carota HOM05D001033 ORTHO05D002045 3.4e-13 78.2 79 55.7
Glyma.14G093300 Glycine max HOM05D001033 ORTHO05D002045 3.4e-13 78.2 79 55.7
Nitab4.5_0001967g0030 Nicotiana tabacum HOM05D001033 ORTHO05D002045 3.4e-13 78.2 79 54.4
arahy.Tifrunner.gnm1.ann1.0Y1MFM Arachis hypogaea HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
arahy.Tifrunner.gnm1.ann1.W3D2I3 Arachis hypogaea HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
FvH4_2g32100 Fragaria vesca HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
FAN15G1414 Fragaria x ananassa HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
FAN20G0898 Fragaria x ananassa HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
FAN24G1263 Fragaria x ananassa HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
FAN27G0170 Fragaria x ananassa HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
Lj7A279G24 Lonicera japonica HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
Lalb_Chr14g0367801 Lupinus albus HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
Lalb_Chr22g0356051 Lupinus albus HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
Lalb_Chr24g0399621 Lupinus albus HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
MD08G1044100 Malus domestica HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
MD15G1061400 Malus domestica HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
Nitab4.5_0005816g0040 Nicotiana tabacum HOM05D001033 ORTHO05D002045 4.4e-13 77.8 40 87.5
Os05g0533700 Oryza sativa ssp. japonica HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 53.2
Prupe.1G414100 Prunus persica HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
RcHm_v2.0_Chr6g0310641 Rosa chinensis HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 55.7
SEGI_18820 Sequoiadendron giganteum HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 54.4
VMungo0647G2366 Vigna mungo HOM05D001033 ORTHO05D002045 4.4e-13 77.8 79 54.4
Nitab4.5_0001584g0070 Nicotiana tabacum HOM05D001033 ORTHO05D002045 5.7e-13 77.4 79 54.4
TAR624G0653 Trochodendron aralioides HOM05D001033 ORTHO05D002045 5.7e-13 77.4 78 55.1
TAR624G1164 Trochodendron aralioides HOM05D001443 ORTHO05D001352 5.7e-13 77.4 78 55.1
Actinidia14706 Actinidia chinensis HOM05D001033 ORTHO05D002045 7.5e-13 77.0 79 54.4
Nitab4.5_0001107g0150 Nicotiana tabacum HOM05D001033 ORTHO05D002045 7.5e-13 77.0 79 54.4
Nitab4.5_0001179g0100 Nicotiana tabacum HOM05D001033 ORTHO05D002045 7.5e-13 77.0 79 54.4
Nitab4.5_0003550g0040 Nicotiana tabacum HOM05D001033 ORTHO05D002045 7.5e-13 77.0 79 54.4
Peaxi162Scf00136g00619 Petunia axillaris HOM05D001033 ORTHO05D002045 7.5e-13 77.0 79 54.4
Peaxi162Scf00247g00614 Petunia axillaris HOM05D001033 ORTHO05D002045 7.5e-13 77.0 79 54.4
Phvul.001G033900 Phaseolus vulgaris HOM05D001033 ORTHO05D002045 7.5e-13 77.0 79 54.4
ATR0763G079 Amborella trichopoda HOM05D001033 ORTHO05D002045 9.8e-13 76.6 79 54.4
CDE02G3778 Ceratophyllum demersum HOM05D001033 ORTHO05D002045 9.8e-13 76.6 79 54.4
CDE04G1898 Ceratophyllum demersum HOM05D001033 ORTHO05D002045 9.8e-13 76.6 79 54.4
CDE07G1408 Ceratophyllum demersum HOM05D001033 ORTHO05D002045 9.8e-13 76.6 79 54.4
Ciclev10026474m.g Citrus clementina HOM05D001033 ORTHO05D002045 9.8e-13 76.6 51 72.5
Eucgr.C00638 Eucalyptus grandis HOM05D001033 ORTHO05D002045 1.3e-12 76.3 79 54.4
Cfa017943 Carpinus fangiana HOM05D001033 ORTHO05D002045 2.2e-12 75.5 79 54.4
Haze_18205 Corylus avellana HOM05D001033 ORTHO05D002045 2.2e-12 75.5 79 54.4
Hma1.2p1_0450F.1_g155600 Hydrangea macrophylla HOM05D001033 ORTHO05D002045 2.2e-12 75.5 77 54.5
TAR636G0841 Trochodendron aralioides HOM05D001229 ORTHO05D001374 2.2e-12 75.5 79 53.2
Rhsim07G0143200 Rhododendron simsii HOM05D001033 ORTHO05D002045 3.7e-12 74.7 79 53.2
Pp3c15_14890 Physcomitrium patens HOM05D001033 ORTHO05D002045 4.8e-12 74.3 79 53.2
Pp3c15_20620 Physcomitrium patens HOM05D001033 ORTHO05D002045 4.8e-12 74.3 79 53.2
PGR031G2750 Punica granatum HOM05D001033 ORTHO05D002045 4.8e-12 74.3 79 53.2
Mapoly0042s0039 Marchantia polymorpha HOM05D001033 ORTHO05D002045 6.3e-12 73.9 79 53.2
SMO367G0380 Selaginella moellendorffii HOM05D001033 ORTHO05D002045 6.3e-12 73.9 79 53.2
Actinidia01197 Actinidia chinensis HOM05D001033 ORTHO05D002045 1.1e-11 73.2 79 51.9
PSO063G7417 Papaver somniferum HOM05D001033 ORTHO05D002045 1.4e-11 72.8 79 51.9
PSO832G2727 Papaver somniferum HOM05D001033 ORTHO05D002045 1.4e-11 72.8 79 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1926 Anthoceros agrestis HOM05D001033 ORTHO05D002045 2.4e-11 72.0 79 53.2
QL05p015451 Quercus lobata HOM05D001033 ORTHO05D002045 2.4e-11 72.0 82 47.6
QL05p016066 Quercus lobata HOM05D001033 ORTHO05D002045 2.4e-11 72.0 82 47.6
QL05p015480 Quercus lobata HOM05D001033 ORTHO05D002045 3.1e-11 71.6 78 48.7
QL05p016099 Quercus lobata HOM05D001033 ORTHO05D002045 3.1e-11 71.6 78 48.7
ATR0099G008 Amborella trichopoda HOM05D001033 ORTHO05D002045 4.5e-10 67.8 78 48.7
CBR_g41644 Chara braunii HOM05D001033 ORTHO05D002045 7.7e-10 67.0 79 50.6
PRCOL_00001757 Prasinoderma coloniale HOM05D001033 ORTHO05D002045 1.3e-09 66.2 79 46.8
EL10Ac5g11544 Beta vulgaris HOM05D001183 ORTHO05D021154 2.2e-09 65.5 47 74.5
Cre12.g492300 Chlamydomonas reinhardtii HOM05D001033 ORTHO05D002045 2.2e-09 65.5 79 48.1
Haze_26388 Corylus avellana HOM05D001033 ORTHO05D002045 6.5e-09 63.9 79 46.8
Cfa022782 Carpinus fangiana HOM05D001033 ORTHO05D002045 4.7e-07 57.8 73 43.8


User provided reference genes

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